JEFworks-Lab / velovizLinks
RNA-velocity informed embeddings for visualizing cellular trajectories
☆44Updated 2 years ago
Alternatives and similar repositories for veloviz
Users that are interested in veloviz are comparing it to the libraries listed below
Sorting:
- Cell-type Relationship Analysis Workflow Done Across Distances☆36Updated 2 months ago
- Single-cell Case Control Analysis☆52Updated 9 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 2 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆34Updated 3 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last week
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆33Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated 3 weeks ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 3 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 2 months ago
- ☆56Updated last year
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 3 years ago
- ☆29Updated 2 years ago
- ☆29Updated 5 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- ☆40Updated last week
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated 3 weeks ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆16Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- ☆22Updated 2 years ago
- ☆52Updated 2 years ago
- Single-cell Mutual Information-based Network Engineering Ranger☆20Updated last week