JEFworks-Lab / velovizLinks
RNA-velocity informed embeddings for visualizing cellular trajectories
☆44Updated 3 years ago
Alternatives and similar repositories for veloviz
Users that are interested in veloviz are comparing it to the libraries listed below
Sorting:
- Gene regulatory network containing signed transcription factor-target gene interactions☆93Updated 7 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated last month
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last month
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆44Updated 4 months ago
- ☆60Updated 4 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- A repository for benchmarking spatial deconvolution and mapping tools☆35Updated 7 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆34Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 4 months ago
- ☆44Updated last month
- ☆10Updated 2 years ago
- Single-cell Case Control Analysis☆52Updated last week
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 2 weeks ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 3 months ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆21Updated 2 years ago
- Multi-resolution Variational Inference☆22Updated 3 weeks ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆34Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- ☆53Updated 2 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Updated last year
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- analysis script for GBM single cell RNA seq data☆22Updated 4 years ago
- Single-cell Mutual Information-based Network Engineering Ranger☆21Updated 4 months ago