Teichlab / limbcellatlas
This repository contains codes used for the human fetal limb cell atlas.
☆13Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for limbcellatlas
- ☆17Updated last month
- An end-to-end computational pipeline for large Perturb-seq screens☆12Updated last year
- Gene Set + S2G strategy annotations analyzed for disease architecture☆47Updated 2 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆25Updated last year
- The scripts used for the analyses in TOME project☆21Updated 11 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 8 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 8 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆17Updated last year
- R package for transfer learning of single-cell RNA-seq denoising☆29Updated 2 years ago
- Code, data and analysis for moslin.☆11Updated last month
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆20Updated 2 months ago
- Paired Insertion Counting for snATAC-seq data☆16Updated 3 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- BioTIP: Biological Tipping-Point Identification and Characterization☆18Updated 4 months ago
- Information-based dimensionality reduction☆29Updated 3 months ago
- Interactive visualisation of CellphoneDB results☆9Updated this week
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 7 months ago
- ☆11Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 11 months ago
- CAST package☆25Updated 3 weeks ago
- The scripts used for analyzing JAX mouse dataset☆21Updated 3 weeks ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 2 months ago
- ☆34Updated 6 months ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆24Updated 4 months ago
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆32Updated 2 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆10Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 3 weeks ago