Alternatives and similar repositories for limbcellatlas

Users that are interested in limbcellatlas are comparing it to the libraries listed below

• Teichlab / sctk
  ☆41Updated 2 months ago
• ajaynadig / TRADEtools
  ☆31Updated 7 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆65Updated 3 months ago
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆28Updated 2 years ago
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated last year
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆41Updated last year
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 9 months ago
• rajewsky-lab / spacemake
  ☆45Updated 2 weeks ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆44Updated last month
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆72Updated 5 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 6 months ago
• SchubertLab / mvTCR
  ☆54Updated 11 months ago
• EraslanBas / PerturbDecode
  An end-to-end computational pipeline for large Perturb-seq screens
  ☆14Updated 6 months ago
• lamanno-epfl / velocycle
  Bayesian model for RNA velocity estimation of periodic manifolds
  ☆33Updated last year
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆77Updated last year
• WanluLiuLab / scAtlasVAE
  ☆39Updated 4 months ago
• immunogenomics / starCAT
  Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs
  ☆69Updated last month
• ChengxiangQiu / JAX_code
  The scripts used for analyzing JAX mouse dataset
  ☆26Updated last year
• limin321 / stmut
  Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data
  ☆13Updated 11 months ago
• ChengxiangQiu / tome_code
  The scripts used for the analyses in TOME project
  ☆25Updated 11 months ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 3 years ago
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆28Updated this week
• ventolab / cellphonedbviz
  Interactive visualisation of CellphoneDB results
  ☆10Updated 9 months ago
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆25Updated 2 years ago
• DongqingSun96 / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆17Updated 3 years ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆27Updated this week
• Papatheodorou-Group / BENGAL
  Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets
  ☆41Updated 3 months ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆27Updated 9 months ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆37Updated 2 years ago