Sanofi-Public / spatialone-pipeline
Spatial One
☆19Updated 3 months ago
Alternatives and similar repositories for spatialone-pipeline:
Users that are interested in spatialone-pipeline are comparing it to the libraries listed below
- Multi-resolution Variational Inference☆22Updated 3 months ago
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆26Updated this week
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆21Updated 2 months ago
- ☆33Updated 4 months ago
- Interactive visualisation of CellphoneDB results☆9Updated 2 weeks ago
- Aligning gene expression trajectories of single-cell reference and query systems☆54Updated 3 months ago
- CAST package☆27Updated 3 months ago
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- Python implementation of Gene Trajectory☆24Updated 4 months ago
- Paired Insertion Counting for snATAC-seq data☆17Updated 5 months ago
- ☆12Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆29Updated 2 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 months ago
- ☆11Updated 2 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated 5 months ago
- .h5mu files interface for Seurat☆28Updated last year
- Cell-type Relationship Analysis Workflow Done Across Distances☆27Updated last week
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆44Updated 2 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 3 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆27Updated 3 weeks ago
- ☆27Updated last year
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆18Updated 6 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated last month
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 6 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆26Updated 7 months ago
- Single-cell Case Control Analysis☆48Updated 2 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆14Updated 3 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆49Updated 4 months ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆19Updated 3 months ago
- ☆25Updated 2 months ago