Spatial One
☆30Oct 31, 2024Updated last year
Alternatives and similar repositories for spatialone-pipeline
Users that are interested in spatialone-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆82Feb 10, 2026Updated 4 months ago
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated last year
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆32Oct 6, 2025Updated 9 months ago
- ☆14Mar 20, 2021Updated 5 years ago
- MIPHEI-ViT: Repository to train Image-to-Image H&E to Immunofluorescence models☆53Apr 7, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆10Jan 17, 2023Updated 3 years ago
- Join subcellular Visium HD bins into cells☆143May 8, 2026Updated 2 months ago
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆76Jun 22, 2026Updated 2 weeks ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆286Updated this week
- R API and htmlwidget for Vitessce☆45Aug 13, 2025Updated 10 months ago
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆38Apr 30, 2025Updated last year
- rna2seg☆26May 15, 2025Updated last year
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆22May 27, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆34Dec 30, 2025Updated 6 months ago
- RA Synovial Single-cell Multimodal Cell Atlas☆22Mar 6, 2024Updated 2 years ago
- ☆29Apr 26, 2024Updated 2 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆15Jan 26, 2026Updated 5 months ago
- Single Cell RNA PolyA Site Discovery☆11Jun 17, 2026Updated 3 weeks ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆97Apr 30, 2026Updated 2 months ago
- ☆16Sep 29, 2023Updated 2 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- ☆17Mar 26, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Database for collecting and curating scientific papers related to single-cell and spatial transcriptomics sequencing.☆14Oct 5, 2025Updated 9 months ago
- Gene group activity utility functions for Scanpy☆108Dec 21, 2024Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆61Aug 17, 2024Updated last year
- ☆12Nov 20, 2023Updated 2 years ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆51Mar 20, 2018Updated 8 years ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- ☆16May 19, 2026Updated last month
- Detect and track football players☆10Jul 25, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆12Mar 22, 2023Updated 3 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- Public repo for STEP: Spatial Transcriptomics Embedding Procedure☆17Nov 13, 2024Updated last year
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆214May 12, 2026Updated last month
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Jun 29, 2026Updated last week
- ☆43Jan 12, 2026Updated 5 months ago
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆15Jun 19, 2026Updated 2 weeks ago