Sanofi-Public / spatialone-pipelineLinks
Spatial One
☆29Updated 11 months ago
Alternatives and similar repositories for spatialone-pipeline
Users that are interested in spatialone-pipeline are comparing it to the libraries listed below
Sorting:
- R package for normalisation of spatial transcriptomics data☆14Updated 4 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- ☆20Updated 3 weeks ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆22Updated 4 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 4 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 8 months ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆33Updated 8 months ago
- ☆30Updated 5 months ago
- Multi-resolution Variational Inference☆22Updated 2 weeks ago
- scTM: A package for topic modelling in transcriptomics data☆23Updated last year
- CAST package☆40Updated last year
- Spatial direct messaging detected by bivariate Moran☆30Updated 3 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- ☆31Updated this week
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆14Updated 2 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last week
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated last year
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆13Updated last year
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆63Updated 4 months ago
- An R package for performing cell typing in SMI and other single cell data☆42Updated 5 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 2 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆16Updated last month
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆39Updated 8 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Updated last year
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated last year
- ☆18Updated 4 months ago
- ☆31Updated 8 months ago
- A modular tool for proportion analysis in single-cell sequencing data