Sanofi-Public / spatialone-pipelineLinks
Spatial One
☆28Updated 10 months ago
Alternatives and similar repositories for spatialone-pipeline
Users that are interested in spatialone-pipeline are comparing it to the libraries listed below
Sorting:
- Cell-type Relationship Analysis Workflow Done Across Distances☆36Updated 3 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 3 weeks ago
- Spatial direct messaging detected by bivariate Moran☆27Updated 2 months ago
- R package for normalisation of spatial transcriptomics data☆12Updated 3 months ago
- ☆31Updated last month
- ☆20Updated last month
- ☆30Updated 4 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- CAST package☆40Updated 10 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆59Updated 3 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 7 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆13Updated last month
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated last year
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆20Updated 3 months ago
- ☆22Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 6 months ago
- ☆31Updated 6 months ago
- iterative clustering pipeline of big single cell datasets.☆33Updated last week
- Multi-resolution Variational Inference☆22Updated 2 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆50Updated 10 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated last month
- ☆41Updated last month
- ☆53Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 4 months ago
- scTM: A package for topic modelling in transcriptomics data☆22Updated last year
- .h5mu files interface for Seurat☆32Updated last year
- Hotspot cluster distance analysis in spatial transcriptomic data☆29Updated 7 months ago
- An R package for performing cell typing in SMI and other single cell data☆39Updated 3 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Updated 11 months ago