Alternatives and similar repositories for spatialone-pipeline

Users that are interested in spatialone-pipeline are comparing it to the libraries listed below

• yunguan-wang / Spacia
  ☆30Updated 3 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆27Updated last month
• JinmiaoChenLab / scTM
  scTM: A package for topic modelling in transcriptomics data
  ☆21Updated last year
• satijalab / panhumanpy
  ☆20Updated 3 weeks ago
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆59Updated 2 months ago
• Banovich-Lab / Spatial_PF
  ☆29Updated last month
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆41Updated last week
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 6 months ago
• wanglab-broad / CAST
  CAST package
  ☆40Updated 10 months ago
• tudaga / LabelCorrection
  Python code for cross-condition label refinement in single-cell data with HiDDEN
  ☆13Updated 11 months ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆36Updated 2 months ago
• YosefLab / mrvi_archive
  Multi-resolution Variational Inference
  ☆23Updated 2 months ago
• 10XGenomics / janesick_nature_comms_2023_companion
  Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…
  ☆24Updated last year
• dyxmvp / Spatial_ATAC-seq
  ☆22Updated 2 years ago
• Janezjz / cellanova
  CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration
  ☆50Updated 9 months ago
• kharchenkolab / scITD
  Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition
  ☆61Updated last year
• kaishumason / NicheDE
  NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.
  ☆20Updated 2 months ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆27Updated last year
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆23Updated 3 months ago
• hernet / transcriptional-map-nk
  We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…
  ☆11Updated 10 months ago
• jbergenstrahle / STUtility
  ☆52Updated 2 years ago
• LiHongCSBLab / SOAPy
  ☆31Updated 6 months ago
• davidliwei / PS
  Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…
  ☆15Updated last year
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆33Updated this week
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆56Updated 4 months ago
• Winnie09 / Lamian
  ☆56Updated last year
• Teichlab / sctk
  ☆40Updated 2 weeks ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆73Updated 2 weeks ago
• CamaraLab / ConDecon
  R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…
  ☆13Updated 10 months ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆44Updated 2 years ago