miti-consortium / MITI
Minimum Information about Tissue Imaging
☆20Updated last year
Alternatives and similar repositories for MITI:
Users that are interested in MITI are comparing it to the libraries listed below
- ☆11Updated this week
- ☆48Updated this week
- Interoperability between SpatialData and the Xenium Explorer☆17Updated 6 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆16Updated last week
- ☆25Updated 4 months ago
- ☆17Updated last month
- A plugin to visualise 3D spatial single cell omics☆22Updated 10 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated 2 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆26Updated 3 weeks ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆25Updated 4 months ago
- Python API and Jupyter widget for Vitessce☆43Updated last week
- Interactive visualization of spatial omics data☆48Updated this week
- Segmentation error aware clustering for multiplexed imaging☆15Updated last month
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 8 months ago
- ☆17Updated 10 months ago
- https://harpy.readthedocs.io/en/latest/☆14Updated this week
- ☆27Updated 4 months ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated last year
- MERFISH decoding software☆25Updated last year
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Updated 4 years ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆23Updated this week
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- ☆29Updated 9 months ago
- Slides and Notebooks for scverse 2024☆17Updated 4 months ago
- Image registration (alignment) software for large microscopy images☆22Updated last year
- ☆30Updated last year
- ☆21Updated 4 years ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆38Updated this week
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago