miti-consortium / MITILinks
Minimum Information about Tissue Imaging
☆21Updated 2 years ago
Alternatives and similar repositories for MITI
Users that are interested in MITI are comparing it to the libraries listed below
Sorting:
- ☆13Updated last month
- Python API and Jupyter widget for Vitessce☆60Updated last month
- ☆85Updated last week
- Optimal gating strategies for flow and mass cytometry.☆16Updated last month
- A plugin to visualise 3D spatial single cell omics☆20Updated 2 months ago
- ☆19Updated 3 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 3 months ago
- ☆30Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 7 months ago
- An introduction to OME-Zarr for big bioimaging data☆22Updated this week
- Slides and Notebooks for scverse 2024☆17Updated last year
- Automatically annotate cell types, consistently across samples.☆17Updated this week
- rna2seg☆17Updated 7 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Updated last week
- ☆27Updated last year
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated last week
- ☆29Updated last year
- Framework for image and flow cytometry analysis☆32Updated 2 months ago
- ☆22Updated 5 years ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Updated 5 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated last month
- Segmentation error aware clustering for multiplexed imaging☆19Updated 11 months ago
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆22Updated 8 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 6 months ago
- Fast reconstruction of spatial networks from bioimages.☆25Updated 8 months ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago