Minimum Information about Tissue Imaging
☆21Oct 18, 2023Updated 2 years ago
Alternatives and similar repositories for MITI
Users that are interested in MITI are comparing it to the libraries listed below
Sorting:
- ☆14Updated this week
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆15Updated this week
- ☆30Oct 4, 2024Updated last year
- An Ilastik-like interactive pixel classifier.☆16Sep 5, 2024Updated last year
- Segmentation error aware clustering for multiplexed imaging☆19Jan 9, 2025Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Dec 4, 2025Updated 2 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆31May 27, 2025Updated 9 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 3 months ago
- Create web-based OME-Zarr galleries☆22Nov 6, 2025Updated 3 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Nov 16, 2025Updated 3 months ago
- Fast reconstruction of spatial networks from bioimages.☆25Apr 25, 2025Updated 10 months ago
- ☆89Updated this week
- ☆23Mar 26, 2021Updated 4 years ago
- Deep learning based spot detection for FISH images.☆31Jan 7, 2026Updated last month
- Running ImJoy plugins in Jupyter notebooks☆11Jan 10, 2023Updated 3 years ago
- This is a repository for the Automated Microscopy Control Environment.☆10Jan 6, 2022Updated 4 years ago
- Optimal gating strategies for flow and mass cytometry.☆16Nov 5, 2025Updated 3 months ago
- ☆13Jun 6, 2024Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆25Jul 31, 2024Updated last year
- Multiple-choice microscopy pipeline☆147Feb 16, 2026Updated last week
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 5 months ago
- Build contrasts for models defined with formulaic☆12Updated this week
- Command-line client for Fractal☆48Feb 16, 2026Updated last week
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- ☆19Feb 18, 2026Updated last week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Feb 8, 2026Updated 3 weeks ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Jun 13, 2025Updated 8 months ago
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data☆12Dec 3, 2022Updated 3 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Jun 25, 2025Updated 8 months ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆14Nov 7, 2024Updated last year
- Python libraries for loading, running and packaging bioimage.io models☆35Feb 19, 2026Updated last week
- A performant scientific image visualization system.☆36Updated this week
- ☆15Feb 5, 2025Updated last year
- Schema.org Data Models for HTAN☆15Sep 4, 2025Updated 5 months ago
- rna2seg☆17May 15, 2025Updated 9 months ago
- Python API and Jupyter widget for Vitessce☆62Feb 12, 2026Updated 2 weeks ago
- ☆27Oct 12, 2024Updated last year