miti-consortium / MITILinks
Minimum Information about Tissue Imaging
☆20Updated last year
Alternatives and similar repositories for MITI
Users that are interested in MITI are comparing it to the libraries listed below
Sorting:
- ☆13Updated last month
- Python API and Jupyter widget for Vitessce☆54Updated this week
- A plugin to visualise 3D spatial single cell omics☆21Updated 2 months ago
- ☆68Updated last week
- ☆18Updated 3 months ago
- Optimal gating strategies for flow and mass cytometry.☆14Updated 5 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 weeks ago
- Automatically annotate cell types, consistently across samples.☆15Updated last month
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated 3 weeks ago
- ☆28Updated 11 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 3 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated this week
- Image registration (alignment) software for large microscopy images☆25Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆51Updated last week
- rna2seg☆17Updated 4 months ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆11Updated last year
- ☆29Updated last year
- ☆27Updated 11 months ago
- Segmentation error aware clustering for multiplexed imaging☆18Updated 8 months ago
- Slides and Notebooks for scverse 2024☆17Updated 11 months ago
- Framework for image and flow cytometry analysis☆28Updated last month
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆33Updated this week
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆11Updated 2 years ago
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Updated 4 years ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆20Updated 5 months ago
- Deep learning based spot detection for FISH images.☆24Updated last week
- Static plotting for spatialdata☆65Updated this week
- Single-cell spatial proteomics analysis that makes you happy!☆38Updated this week