kurtsemih / copyVAELinks
A variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics
☆9Updated last year
Alternatives and similar repositories for copyVAE
Users that are interested in copyVAE are comparing it to the libraries listed below
Sorting:
- ☆35Updated last year
- ☆49Updated 11 months ago
- cell type specific, trait-associated gene regulation☆27Updated 3 months ago
- ☆17Updated 2 years ago
- R package of CSOmap(developing☆14Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 10 months ago
- ☆19Updated 2 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- ☆17Updated 2 years ago
- Trends in single cell papers☆15Updated 9 months ago
- ☆23Updated 2 years ago
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆10Updated last year
- Code and data sharing of Liu et al. 2023 manuscript☆15Updated 2 years ago
- ☆20Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- ☆23Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 3 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated last year
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- Landscape Single Cell Entropy☆20Updated 4 years ago
- python API to the CoGAPS NMF package☆19Updated last month
- Toolkit for single-cell copy number analysis☆23Updated this week
- R tools for analysis and visualization of single-cell subclustering data☆17Updated last year
- ☆12Updated last year
- ☆32Updated 5 months ago
- A record of the analysis pipelines used to create the HTAPP data☆33Updated 3 months ago