Alternatives and similar repositories for spots

Users that are interested in spots are comparing it to the libraries listed below

• liranmao / Spatial_multi_omics
  ☆11Updated 7 months ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆29Updated 2 years ago
• mardzix / bcd_nano_CUTnTag
  ☆12Updated last year
• stephenslab / gbcd
  R package for generalized binary covariance decomposition.
  ☆10Updated last month
• elo073 / 5loclung
  Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung
  ☆12Updated last year
• lueckenlab / single-cell-papers-trends
  Trends in single cell papers
  ☆16Updated 11 months ago
• alexQiSong / scSTEM
  Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…
  ☆18Updated 3 years ago
• limin321 / stmut
  Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data
  ☆12Updated 9 months ago
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year
• AmandaKedaigle / OrganoidAtlas
  Code to go along with https://doi.org/10.1016/j.cell.2022.09.010
  ☆21Updated 3 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆20Updated last year
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆21Updated 3 weeks ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 5 months ago
• madhavmantri / chicken_heart
  Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis
  ☆13Updated last year
• dyxmvp / Spatial_ATAC-seq
  ☆22Updated 2 years ago
• bwalker1 / NeST
  ☆13Updated last year
• DongqingSun96 / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆17Updated 3 years ago
• MarioniLab / oor_design_reproducibility
  ☆16Updated 2 years ago
• broadchenf / Slide-tags
  ☆11Updated 2 years ago
• kjgaulton / pipelines
  Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data
  ☆27Updated 4 years ago
• FertigLab / pycogaps
  python API to the CoGAPS NMF package
  ☆19Updated 3 months ago
• dbrg77 / ISSAAC-seq
  ☆17Updated 2 years ago
• jranek / EVI
  Integrating temporal gene expression modalities for trajectory inference and disease prediction
  ☆10Updated 2 years ago
• liuqivandy / SpaGene
  ☆24Updated 2 years ago
• dpeerlab / progressive-plasticity-crc-metastasis
  Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
  ☆16Updated 9 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 6 months ago
• epigen / scifiRNA-seq_publication
  The million-scale method for single-cell analysis
  ☆10Updated 2 years ago
• chenhcs / scResolve
  ☆13Updated 11 months ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆21Updated last year