stevexniu / spotsLinks
Statistical analysis for spatial omics data
☆11Updated 3 years ago
Alternatives and similar repositories for spots
Users that are interested in spots are comparing it to the libraries listed below
Sorting:
- Python package to generate high dimensional Flow Cytometry datasets using imputation by XGBoost regression☆11Updated last year
- ☆13Updated 2 months ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Updated 3 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Updated 2 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆19Updated 3 years ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆14Updated last year
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated last year
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆12Updated last year
- ☆12Updated 2 years ago
- ☆12Updated 4 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 9 months ago
- Trends in single cell papers☆16Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated last year
- ☆17Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- python API to the CoGAPS NMF package☆19Updated 7 months ago
- ☆18Updated 2 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated 4 months ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- ☆16Updated 2 years ago
- ☆12Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- ☆15Updated 2 years ago
- R package for generalized binary covariance decomposition.☆13Updated 5 months ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Updated last year
- The million-scale method for single-cell analysis☆10Updated 2 years ago
- ☆11Updated last year
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆23Updated 2 months ago
- Code, data and analysis for moslin.☆15Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆27Updated last year