stevexniu / spotsLinks
Statistical analysis for spatial omics data
☆10Updated 3 years ago
Alternatives and similar repositories for spots
Users that are interested in spots are comparing it to the libraries listed below
Sorting:
- ☆12Updated 7 months ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆18Updated 3 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆29Updated 2 years ago
- ☆12Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆21Updated last year
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 6 months ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆12Updated 10 months ago
- Trends in single cell papers☆16Updated last year
- R package for generalized binary covariance decomposition.☆10Updated 2 months ago
- ☆12Updated 4 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Code, data and analysis for moslin.☆14Updated 11 months ago
- ☆17Updated 2 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Updated 3 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 11 months ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆12Updated last year
- ☆16Updated 2 years ago
- ☆13Updated 2 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 4 years ago
- ☆24Updated 2 years ago
- ☆17Updated last year
- ☆20Updated 2 months ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- ☆11Updated 2 years ago
- ☆22Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- ☆11Updated last year
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆16Updated 9 months ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago