A end-to-end scRNA-seq analysis pipeline for cross-group comparison
☆19Aug 4, 2026Updated last week
Alternatives and similar repositories for scDAPP
Users that are interested in scDAPP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆45Mar 30, 2024Updated 2 years ago
- Cell Annotation using Machine Learning-based method for the presence of Unknown cells (CAMLU)☆13May 19, 2025Updated last year
- ☆12Sep 7, 2023Updated 2 years ago
- ☆12Apr 25, 2026Updated 3 months ago
- DolphinNext Tutorial documents☆16Jul 5, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- The user can generate Molecular Tumor Board reports for TCGA samples☆15Mar 21, 2020Updated 6 years ago
- ☆11Dec 22, 2025Updated 7 months ago
- Toolbox of the Human Neural Organoid Cell Atlas☆35Updated this week
- Central repository for the VICC metakb web application☆15Jul 29, 2026Updated 2 weeks ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Jan 5, 2025Updated last year
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆18Aug 7, 2026Updated last week
- Dependency-aware deep generative models for multitasking analysis of spatial genomics data☆47Jul 10, 2024Updated 2 years ago
- A Transcriptomics-Proteomics Integration Pipeline☆22Apr 11, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- RNA-seq workflow for Snakemake based on STAR and featureCounts.☆24May 25, 2019Updated 7 years ago
- ☆15Jan 28, 2023Updated 3 years ago
- ☆13Jun 6, 2024Updated 2 years ago
- ☆18Mar 31, 2024Updated 2 years ago
- ☆15Aug 17, 2023Updated 2 years ago
- ☆18Jul 3, 2022Updated 4 years ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆16Jul 14, 2026Updated 3 weeks ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆23Jan 5, 2023Updated 3 years ago
- Original materials for the "Introduction to Solving Biological Problems with Python" 2 days course☆10Jun 25, 2018Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- an organelle emulator written in pygame + puredata☆13Aug 31, 2021Updated 4 years ago
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.☆27Mar 4, 2024Updated 2 years ago
- A MatLab framework to facilitate the analysis of bipartite complex networks☆10Jul 12, 2015Updated 11 years ago
- Fast algorithms for GLM-PCA.☆17Mar 12, 2025Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- ☆49Jun 3, 2026Updated 2 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R functions for very fast eigenvector calculation☆11Jan 18, 2023Updated 3 years ago
- ☆40Jun 24, 2025Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆195Aug 12, 2025Updated last year
- ☆21Nov 12, 2025Updated 9 months ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆20Nov 29, 2022Updated 3 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆56Aug 3, 2026Updated last week
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆14Jul 7, 2026Updated last month