A end-to-end scRNA-seq analysis pipeline for cross-group comparison
☆19May 18, 2025Updated 9 months ago
Alternatives and similar repositories for scDAPP
Users that are interested in scDAPP are comparing it to the libraries listed below
Sorting:
- ☆11Sep 7, 2023Updated 2 years ago
- ☆13Jun 6, 2024Updated last year
- Interactive visualisation of CellphoneDB results☆12Jan 15, 2025Updated last year
- ☆11May 10, 2025Updated 9 months ago
- ☆11Nov 12, 2025Updated 3 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Mar 30, 2024Updated last year
- ☆13Feb 12, 2026Updated 2 weeks ago
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆20Feb 10, 2026Updated 3 weeks ago
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆18Jan 19, 2026Updated last month
- ☆15Jan 28, 2023Updated 3 years ago
- A Transcriptomics-Proteomics Integration Pipeline☆18Apr 11, 2024Updated last year
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆19Nov 29, 2022Updated 3 years ago
- Fast algorithms for GLM-PCA.☆14Mar 12, 2025Updated 11 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated last year
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- This repository contains codes used for the human fetal limb cell atlas.☆17Jan 28, 2025Updated last year
- ☆19Mar 31, 2024Updated last year
- ☆15Aug 17, 2023Updated 2 years ago
- ☆20Jan 10, 2025Updated last year
- ☆41Jun 24, 2025Updated 8 months ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Jan 5, 2025Updated last year
- ☆18Jul 3, 2022Updated 3 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Feb 15, 2026Updated 2 weeks ago
- Toolbox of the Human Neural Organoid Cell Atlas☆30Feb 23, 2026Updated last week
- Paired Insertion Counting for snATAC-seq data☆19May 12, 2025Updated 9 months ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Nov 26, 2023Updated 2 years ago
- Phenotype Associated Spatial Signature Analysis with Graph-based Embedding☆26Mar 5, 2025Updated last year
- devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.☆28Mar 4, 2024Updated 2 years ago
- ☆49Feb 25, 2026Updated last week
- ☆29Sep 4, 2023Updated 2 years ago
- Spatial One☆30Oct 31, 2024Updated last year
- A pipeline to investigate horizontal gene transfer from NGS data☆26Nov 20, 2025Updated 3 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆24Jan 5, 2023Updated 3 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated last year
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆48Feb 20, 2026Updated last week
- Pipeline for Universal Mapping of ATAC-seq☆25Sep 23, 2025Updated 5 months ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆27Jul 17, 2024Updated last year
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆76Feb 10, 2026Updated 3 weeks ago
- Molecular interactions inference from single-cell multi-omics data☆30Jan 14, 2026Updated last month