Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
☆113Jul 4, 2025Updated 10 months ago
Alternatives and similar repositories for openst
Users that are interested in openst are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆49Apr 21, 2026Updated last month
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆32May 27, 2025Updated last year
- Spatiotemporal modeling of spatial transcriptomics☆340Feb 25, 2026Updated 3 months ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- ☆34Oct 10, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- codes for article☆18Jan 14, 2026Updated 4 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Aug 1, 2025Updated 9 months ago
- ☆13Mar 29, 2024Updated 2 years ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆372Updated this week
- BANKSY: spatial clustering☆147Updated this week
- ☆165Dec 20, 2024Updated last year
- ☆17Sep 13, 2024Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆79May 24, 2024Updated 2 years ago
- ☆16Sep 29, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Spatial alignment of single cell transcriptomic data.☆366Jul 1, 2025Updated 10 months ago
- End-to-end analysis of spatial multi-omics data☆115May 15, 2026Updated 2 weeks ago
- ☆41Jun 24, 2025Updated 11 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆99Dec 11, 2023Updated 2 years ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆163Nov 23, 2025Updated 6 months ago
- ☆14Feb 12, 2026Updated 3 months ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆29May 18, 2026Updated last week
- Non-parametric density inference for single-cell analysis.☆74Apr 10, 2026Updated last month
- An open and interoperable data framework for spatial omics data☆372May 21, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆66May 18, 2026Updated last week
- Aligning gene expression trajectories of single-cell reference and query systems☆88Aug 10, 2025Updated 9 months ago
- ☆61Feb 14, 2025Updated last year
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆71Dec 1, 2025Updated 5 months ago
- Static plotting for spatialdata☆82May 21, 2026Updated last week
- ☆62Jul 23, 2024Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆70Apr 24, 2026Updated last month
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆144Feb 20, 2025Updated last year
- Single-cell spatial omics analysis that makes you happy!☆62Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python API and Jupyter widget for Vitessce☆66May 21, 2026Updated last week
- Metacells - Single-cell RNA Sequencing Analysis☆125Apr 20, 2026Updated last month
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆87Nov 16, 2025Updated 6 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆171May 18, 2026Updated last week
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14May 13, 2026Updated 2 weeks ago
- Code for spatial subclone paper☆18Jan 23, 2025Updated last year
- Reference mapping for single-cell genomics☆404Mar 21, 2026Updated 2 months ago