Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
☆116Jul 4, 2025Updated last year
Alternatives and similar repositories for openst
Users that are interested in openst are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆49Jun 3, 2026Updated 3 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆32May 27, 2025Updated last year
- Spatiotemporal modeling of spatial transcriptomics☆342Feb 25, 2026Updated 6 months ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆26Mar 16, 2025Updated last year
- ☆37Oct 10, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- codes for article☆18Jan 14, 2026Updated 7 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆16Aug 1, 2025Updated last year
- ☆13Mar 29, 2024Updated 2 years ago
- BANKSY: spatial clustering☆159May 30, 2026Updated 3 months ago
- ☆172Dec 20, 2024Updated last year
- Cell identification in high-resolution Spatial Transcriptomics☆16Dec 3, 2025Updated 9 months ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆394Updated this week
- ☆20Apr 8, 2025Updated last year
- ☆17Sep 13, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆83May 24, 2024Updated 2 years ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆24Apr 8, 2025Updated last year
- Spatial alignment of single cell transcriptomic data.☆372Jul 1, 2025Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆106Dec 11, 2023Updated 2 years ago
- ☆40Jun 24, 2025Updated last year
- An open and interoperable data framework for spatial omics data☆389Updated this week
- ☆10Jun 1, 2026Updated 3 months ago
- Non-parametric density inference for single-cell analysis.☆75Jul 28, 2026Updated last month
- ☆67Aug 18, 2026Updated 3 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Aligning gene expression trajectories of single-cell reference and query systems☆90Jul 28, 2026Updated last month
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆17Jul 6, 2026Updated 2 months ago
- Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration☆127Updated this week
- ☆61Feb 14, 2025Updated last year
- ☆64Jul 23, 2024Updated 2 years ago
- Profile purification of single-cell spatial transcriptomics data☆57Jun 29, 2026Updated 2 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆151Feb 20, 2025Updated last year
- Static plotting for spatialdata☆86Updated this week
- Metacells - Single-cell RNA Sequencing Analysis☆128Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Python API and Jupyter widget for Vitessce☆67Updated this week
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆170Nov 23, 2025Updated 9 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 9 months ago
- ☆45Jun 3, 2026Updated 3 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- ☆19Sep 19, 2025Updated 11 months ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆71Apr 24, 2026Updated 4 months ago