Single Cell RNA PolyA Site Discovery
☆11Jan 28, 2026Updated last month
Alternatives and similar repositories for scraps
Users that are interested in scraps are comparing it to the libraries listed below
Sorting:
- ☆12Mar 22, 2023Updated 2 years ago
- ggplot2 geoms to outline groups of data points☆16Nov 24, 2023Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆28Nov 13, 2023Updated 2 years ago
- Snakemake pipeline for the preprocessing, alignment, QC, and quantification of spatial transcriptomics data - both short-read and long-re…☆11Nov 16, 2025Updated 3 months ago
- An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal☆14Feb 5, 2026Updated 3 weeks ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆10Jul 21, 2025Updated 7 months ago
- ☆12Nov 20, 2023Updated 2 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- ☆12Sep 29, 2023Updated 2 years ago
- Reference data for cell-type assignment with clustifyr☆13Nov 3, 2022Updated 3 years ago
- Image processing pipeline for spatial projects☆17Aug 3, 2023Updated 2 years ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆17Dec 1, 2024Updated last year
- Analyse RNA feature distributions.☆18Dec 16, 2024Updated last year
- R package of CSOmap(developing☆13Mar 22, 2022Updated 3 years ago
- ☆15Aug 17, 2023Updated 2 years ago
- ☆20Jul 16, 2024Updated last year
- Single-cell analysis with non-negative matrix factorization☆48Jul 24, 2025Updated 7 months ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆40Aug 11, 2022Updated 3 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 3 years ago
- PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT☆18Feb 24, 2026Updated last week
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Jun 11, 2021Updated 4 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Sep 5, 2022Updated 3 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆90Dec 8, 2022Updated 3 years ago
- Piranha is a peak-caller for CLIP- and RIP-seq data☆20Feb 7, 2018Updated 8 years ago
- Reproducing the experiments of the DestVI paper☆22Feb 9, 2022Updated 4 years ago
- ☆49Updated this week
- ☆21Dec 23, 2024Updated last year
- Profile purification of single-cell spatial transcriptomics data☆30Nov 13, 2025Updated 3 months ago
- Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clu…☆23Jul 18, 2022Updated 3 years ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Sep 30, 2022Updated 3 years ago
- All documentation associated with bioinformatics tutorial on the Alpine cluster☆30Jan 12, 2026Updated last month
- Spatial One☆30Oct 31, 2024Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Oct 28, 2019Updated 6 years ago
- Tumor Immune Single-cell Hub☆22Aug 13, 2020Updated 5 years ago
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆26Jul 8, 2025Updated 7 months ago
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆21May 19, 2025Updated 9 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆167Jan 8, 2026Updated last month
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 4 years ago