scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
☆63Aug 17, 2024Updated last year
Alternatives and similar repositories for scar
Users that are interested in scar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆29Sep 4, 2023Updated 2 years ago
- A post-clustering differential expression (DE) method robust to false-positive inflation caused by double dipping☆29Updated this week
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- Reference mapping for single-cell genomics☆407Jun 26, 2026Updated last month
- marker-based purification of cell types from single-cell RNA-seq datasets☆145Mar 13, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- Scaling Single Cell Analysis to Millions of Cells☆301Jul 13, 2026Updated 3 weeks ago
- PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …☆31Jul 1, 2026Updated last month
- ☆19Apr 20, 2025Updated last year
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Aug 3, 2023Updated 3 years ago
- ☆21Dec 26, 2025Updated 7 months ago
- Finding gene expression states in scRNA-seq data☆54Mar 22, 2024Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 7 months ago
- ☆22Jul 17, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 5 years ago
- ☆17Sep 28, 2022Updated 3 years ago
- Multi-origin batch effect remover method☆22Jan 31, 2023Updated 3 years ago
- ☆19May 25, 2026Updated 2 months ago
- Build contrasts for models defined with formulaic☆13Aug 3, 2026Updated last week
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆225Feb 4, 2026Updated 6 months ago
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated last year
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40May 6, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆11Sep 7, 2023Updated 2 years ago
- ☆12May 6, 2022Updated 4 years ago
- Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".☆14Nov 20, 2020Updated 5 years ago
- recipes that save time☆149May 14, 2026Updated 2 months ago
- Blood Transcription Modules for interpreting blood transcriptomics data☆11Nov 25, 2024Updated last year
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year
- ☆11May 5, 2023Updated 3 years ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆13Mar 7, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Vaeda method for computational doublet annotation☆20Feb 1, 2026Updated 6 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆442May 11, 2026Updated 2 months ago
- ☆39Apr 21, 2026Updated 3 months ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆38Nov 18, 2024Updated last year
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆23Feb 1, 2024Updated 2 years ago
- Conversion between scRNA-seq objects☆210May 5, 2026Updated 3 months ago