scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
☆61Aug 17, 2024Updated last year
Alternatives and similar repositories for scar
Users that are interested in scar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆29Sep 4, 2023Updated 2 years ago
- A post-clustering differential expression (DE) method robust to false-positive inflation caused by double dipping☆29Apr 5, 2026Updated 3 weeks ago
- Interactive visualisation of CellphoneDB results☆12Jan 15, 2025Updated last year
- ☆17Sep 28, 2022Updated 3 years ago
- Reference mapping for single-cell genomics☆404Mar 21, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Mar 13, 2026Updated last month
- Multi-origin batch effect remover method☆19Jan 31, 2023Updated 3 years ago
- Scaling Single Cell Analysis to Millions of Cells☆279Apr 9, 2026Updated 3 weeks ago
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆24Apr 19, 2026Updated last week
- PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …☆30Mar 20, 2026Updated last month
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- ☆19Apr 20, 2025Updated last year
- ☆21Dec 26, 2025Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Aug 3, 2023Updated 2 years ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated 11 months ago
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 4 years ago
- Finding gene expression states in scRNA-seq data☆51Mar 22, 2024Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆316Dec 19, 2025Updated 4 months ago
- Build contrasts for models defined with formulaic☆12Updated this week
- Single-cell Mutual Information-based Network Engineering Ranger☆24Aug 28, 2025Updated 8 months ago
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆214Feb 4, 2026Updated 2 months ago
- ☆26Mar 30, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40May 6, 2022Updated 3 years ago
- ☆12May 6, 2022Updated 3 years ago
- ☆11Sep 7, 2023Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆79Aug 17, 2024Updated last year
- Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".☆14Nov 20, 2020Updated 5 years ago
- ☆25Dec 5, 2025Updated 4 months ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated 8 months ago
- ☆21Jul 17, 2024Updated last year
- recipes that save time☆148Feb 11, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆11May 5, 2023Updated 2 years ago
- Blood Transcription Modules for interpreting blood transcriptomics data☆11Nov 25, 2024Updated last year
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 3 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆428Apr 23, 2026Updated last week
- ☆38Apr 21, 2026Updated last week
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆35Nov 18, 2024Updated last year