Novartis / scar
scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
☆52Updated 7 months ago
Alternatives and similar repositories for scar:
Users that are interested in scar are comparing it to the libraries listed below
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated this week
- Python implementation of Milo for differential abundance testing on KNN graph☆64Updated last month
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆71Updated 3 weeks ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆69Updated 2 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Multi-resolution Variational Inference☆22Updated last week
- Capybara: A computational tool to measure cell identity and fate transitions☆58Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 10 months ago
- ☆35Updated last month
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 11 months ago
- .h5mu files interface for Seurat☆29Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 11 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 9 months ago
- Cell type pipes for R☆51Updated last year
- Single cell omics biology annotations☆51Updated last month
- Coarse-graining of large single-cell RNA-seq data into metacells☆77Updated 7 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 10 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆70Updated last year
- Pan-Cancer Single Cell Classifier☆66Updated 10 months ago
- ☆40Updated 4 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆66Updated this week
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- R package for semi-supervised single-cell data integration☆81Updated 2 weeks ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆106Updated 2 months ago
- Single-Cell Clustering Assessment Framework☆99Updated last year
- Functional Inference of Gene Regulation☆41Updated 9 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated last year
- R implementation of MULTI-seq sample classification workflow☆62Updated last year