Alternatives and similar repositories for scar

Users that are interested in scar are comparing it to the libraries listed below

• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆92Updated 6 months ago
• ajaynadig / TRADEtools
  ☆35Updated 9 months ago
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆42Updated 2 weeks ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆56Updated 6 months ago
• cellatlas / human
  ☆44Updated last year
• lcmmichielsen / scHPL
  ☆37Updated 9 months ago
• Teichlab / sctk
  ☆44Updated last month
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆43Updated 2 years ago
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆32Updated 2 years ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆95Updated last year
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆67Updated last month
• theislab / AutoGeneS
  ☆61Updated 4 years ago
• morris-lab / Capybara
  Capybara: A computational tool to measure cell identity and fate transitions
  ☆60Updated 3 years ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 8 months ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• YosefLab / mrvi_archive
  Multi-resolution Variational Inference
  ☆22Updated 2 weeks ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆90Updated last week
• lhe17 / nebula
  ☆45Updated 3 weeks ago
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆34Updated 9 months ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 3 years ago
• jmbreda / Sanity
  Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
  ☆78Updated 3 weeks ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆66Updated 5 months ago
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆126Updated last month
• alexisvdb / singleCellHaystack
  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
  ☆86Updated 3 weeks ago
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆86Updated 8 months ago
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆97Updated last year
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆81Updated last year
• lilab-bcb / harmony-pytorch
  ☆59Updated 7 months ago
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆88Updated last week
• cole-trapnell-lab / cicero-release
  ☆59Updated last year