Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
☆27Nov 21, 2022Updated 3 years ago
Alternatives and similar repositories for BaSISS
Users that are interested in BaSISS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Nov 26, 2023Updated 2 years ago
- A reimplementation of a classical PSMC method in python for educational purposes☆17Jul 22, 2024Updated last year
- End-to-end pipeline for segmenting cell nuclei on histology slides☆16Jul 19, 2022Updated 3 years ago
- ☆14Mar 28, 2025Updated last year
- ☆13Apr 16, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- ☆16Dec 29, 2025Updated 5 months ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 9 years ago
- ☆11May 12, 2021Updated 5 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆14Apr 9, 2022Updated 4 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆50Aug 18, 2025Updated 9 months ago
- Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components☆11Apr 28, 2025Updated last year
- Advanced steps of the OSCA book☆14Apr 27, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Map single-cell transcriptomes to copy number evolutionary trees.☆14Aug 18, 2024Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆43Mar 2, 2025Updated last year
- Spatial Transcriptomic Analysis of OSCC samples☆28Dec 24, 2025Updated 5 months ago
- ☆15Oct 10, 2023Updated 2 years ago
- Code and analysis for the 1000 tools paper☆11Nov 12, 2021Updated 4 years ago
- ☆13Jun 6, 2024Updated last year
- ☆23Mar 29, 2023Updated 3 years ago
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated 4 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Apr 13, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Nov 5, 2020Updated 5 years ago
- Cell Annotation using Machine Learning-based method for the presence of Unknown cells (CAMLU)☆13May 19, 2025Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆70Oct 1, 2023Updated 2 years ago
- ☆11May 26, 2023Updated 3 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆94Dec 8, 2022Updated 3 years ago
- ☆15May 27, 2025Updated last year
- ☆49Apr 21, 2026Updated last month
- Single-cell copy number calling and event history reconstruction.☆28May 13, 2026Updated 2 weeks ago
- ☆26Apr 8, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A novel machine learning pipeline to analyse spatial transcriptomics data☆248May 5, 2026Updated 3 weeks ago
- ☆16Sep 29, 2023Updated 2 years ago
- ☆23Nov 25, 2025Updated 6 months ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated last year
- code repo for Set2Gaussian☆17Jun 19, 2020Updated 5 years ago
- Whole genome workflows☆13Nov 9, 2024Updated last year
- MERFISH decoding software☆26Aug 16, 2025Updated 9 months ago