Alternatives and similar repositories for BaSISS:

Users that are interested in BaSISS are comparing it to the libraries listed below

• wanglab-broad / CAST
  CAST package
  ☆29Updated 3 months ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆18Updated last week
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆28Updated last year
• Teichlab / gene2probe
  Pipeline for designing custom probes against human genes
  ☆15Updated 3 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆33Updated 2 months ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆18Updated this week
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated last year
• Teichlab / sctk
  ☆34Updated 4 months ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆25Updated last year
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 2 months ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆23Updated 6 months ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆47Updated last week
• almaan / eggplant
  ☆20Updated 2 years ago
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆28Updated 2 months ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆29Updated 5 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 2 months ago
• MacoskoLab / slideseq-tools
  Tools for analyzing Slide-seq data
  ☆31Updated last year
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆50Updated last month
• jfnavarro / st_analysis
  A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
  ☆18Updated 3 years ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆29Updated 2 weeks ago
• cbg-ethz / SCICoNE
  Single-cell copy number calling and event history reconstruction.
  ☆20Updated last month
• Teichlab / visium_stitcher
  Stitch multiple Visium slides together
  ☆14Updated last year
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆19Updated last month
• liuqivandy / SpaGene
  ☆18Updated last year
• GuignardLab / sc3D
  Spatial Single Cell transcriptomic library
  ☆17Updated last month
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆20Updated this week
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• mvinyard / ArchR-h5ad
  Parse ArchR arrow files to anndata h5ad
  ☆14Updated last year
• ucsd-ccbb / NetColoc
  development of network co-localization tool
  ☆14Updated 3 months ago