Alternatives and similar repositories for BaSISS

Users that are interested in BaSISS are comparing it to the libraries listed below

• wanglab-broad / CAST
  CAST package
  ☆40Updated last year
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆29Updated 6 months ago
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆41Updated 2 months ago
• Teichlab / gene2probe
  Pipeline for designing custom probes against human genes
  ☆18Updated 11 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆61Updated 2 months ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 9 months ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆43Updated 2 years ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆45Updated 3 years ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆27Updated last year
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated last year
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆22Updated last year
• MacoskoLab / slideseq-tools
  Tools for analyzing Slide-seq data
  ☆31Updated last year
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆26Updated last year
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆55Updated 4 months ago
• jbergenstrahle / STUtility
  ☆53Updated 2 years ago
• dyxmvp / Spatial_ATAC-seq
  ☆23Updated 2 years ago
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆31Updated 3 weeks ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆23Updated last month
• jfnavarro / st_analysis
  A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
  ☆18Updated 4 years ago
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆31Updated last year
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆42Updated 5 months ago
• KlugerLab / GeneTrajectory-python
  Python implementation of Gene Trajectory
  ☆28Updated last year
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 10 months ago
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆38Updated 2 weeks ago
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆21Updated 3 weeks ago
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆21Updated 4 years ago
• secrierlab / SpottedPy
  Hotspot cluster distance analysis in spatial transcriptomic data
  ☆33Updated 8 months ago
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆25Updated 2 years ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 3 years ago
• ucsd-ccbb / NetColoc
  development of network co-localization tool
  ☆14Updated 3 months ago