Mr-Milk / SpatialTisLinks
Spatial analysis toolkit for single cell multiplexed tissue data
☆30Updated 11 months ago
Alternatives and similar repositories for SpatialTis
Users that are interested in SpatialTis are comparing it to the libraries listed below
Sorting:
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆54Updated 2 months ago
- ☆28Updated 10 months ago
- ☆68Updated last week
- Multiview Intercellular SpaTial modeling framework☆64Updated 2 months ago
- Slides and Notebooks for scverse 2024☆17Updated 11 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆82Updated last month
- ☆26Updated 5 years ago
- Multi-modal single cell analysis pipelines☆59Updated last month
- ☆55Updated last week
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆35Updated last year
- Test genes for Spatial Variation☆14Updated 8 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆37Updated 5 months ago
- ☆27Updated 10 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated last week
- Python package for Probe set selection for targeted spatial transcriptomics.☆40Updated last month
- Identification of spatial homogeneous regions☆21Updated 7 months ago
- CAST package☆40Updated 9 months ago
- R package for visualization of highly multiplexed imaging data☆33Updated 2 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆30Updated 11 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆35Updated last week
- ☆38Updated last year
- An R package for performing cell typing in SMI and other single cell data☆39Updated 3 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆44Updated 4 years ago
- spatial transcriptome, single cell☆69Updated 2 years ago
- Spatial Single-Cell Analysis Toolkit☆94Updated last month
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆78Updated 3 years ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆114Updated this week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆59Updated last week
- Analyzing cellular niches in spatial transcriptomics data☆30Updated 9 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated 3 weeks ago