Spatial analysis toolkit for single cell multiplexed tissue data
β30Sep 2, 2024Updated last year
Alternatives and similar repositories for SpatialTis
Users that are interested in SpatialTis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β56Jun 23, 2026Updated 3 weeks ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.β18Updated this week
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNAβ¦β14Oct 17, 2024Updated last year
- Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)β320Jul 8, 2026Updated 2 weeks ago
- β44May 11, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.β32May 27, 2025Updated last year
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniquesβ16Jun 1, 2021Updated 5 years ago
- β13Jun 18, 2026Updated last month
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methodsβ13Jan 10, 2024Updated 2 years ago
- Bayesian Segmentation of Spatial Transcriptomics Dataβ208Jun 26, 2026Updated 3 weeks ago
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, aβ¦β21Updated this week
- Lab for quantitative bioimage analysis experiments in Pythonβ20Feb 16, 2026Updated 5 months ago
- Microscopy Image Cytometry Toolkitβ116Jul 15, 2022Updated 4 years ago
- An interface for Nested Stochastic Block Model for single cell analysisβ38Jul 9, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Spatial Single-Cell Analysis Toolkitβ113Mar 11, 2026Updated 4 months ago
- RAnking Markers for CEll Segmentationβ12Feb 22, 2022Updated 4 years ago
- β49Jun 3, 2026Updated last month
- Cell identification in high-resolution Spatial Transcriptomicsβ15Dec 3, 2025Updated 7 months ago
- A Python package using Gromov-Wasserstein distance to compare cell shapesβ25Jun 15, 2026Updated last month
- Publically accessible code for DIISCO methodβ13Oct 15, 2025Updated 9 months ago
- Flow & mass cytometry analytics.β61Updated this week
- A simple and performant native R reader & writer for Zarr Arraysβ54Updated this week
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.β19Jun 9, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"β21Nov 27, 2025Updated 7 months ago
- Robust and scalable single-cell signature scoringβ28Updated this week
- Pydantic models for OME-NGFFβ24Sep 14, 2025Updated 10 months ago
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seqβ16Dec 1, 2025Updated 7 months ago
- Minimum Information about Tissue Imagingβ21Oct 18, 2023Updated 2 years ago
- ClusterMap for multi-scale clustering analysis of spatial gene expressionβ46Jun 13, 2025Updated last year
- Tools for generating single-cell gene expression dataβ34Jun 20, 2025Updated last year
- Image registration (alignment) software for large microscopy imagesβ27Oct 15, 2023Updated 2 years ago
- Imaris file format readerβ15Aug 20, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.β15Mar 26, 2026Updated 3 months ago
- β23Mar 22, 2023Updated 3 years ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)β452Jul 13, 2026Updated last week
- STREAM2: Fast, scalable, and interactive trajectory analysis of single-cell omics dataβ13Apr 1, 2024Updated 2 years ago
- ATAC-seq lab for BIOINF525β10Mar 31, 2016Updated 10 years ago
- Single-Cell Spatial Explorerβ15Dec 14, 2023Updated 2 years ago
- CAST packageβ44Oct 26, 2024Updated last year