Spatial analysis toolkit for single cell multiplexed tissue data
β30Sep 2, 2024Updated 2 years ago
Alternatives and similar repositories for SpatialTis
Users that are interested in SpatialTis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β56Sep 2, 2026Updated 2 weeks ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.β18Aug 24, 2026Updated 3 weeks ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNAβ¦β14Oct 17, 2024Updated last year
- Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)β323Updated this week
- β44May 11, 2026Updated 4 months ago
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.β32May 27, 2025Updated last year
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniquesβ16Jun 1, 2021Updated 5 years ago
- β13Jun 18, 2026Updated 3 months ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methodsβ13Jan 10, 2024Updated 2 years ago
- Bayesian Segmentation of Spatial Transcriptomics Dataβ214Jul 31, 2026Updated last month
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, aβ¦β21Updated this week
- Microscopy Image Cytometry Toolkitβ117Jul 15, 2022Updated 4 years ago
- Lab for quantitative bioimage analysis experiments in Pythonβ21Feb 16, 2026Updated 7 months ago
- An interface for Nested Stochastic Block Model for single cell analysisβ39Sep 2, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Spatial Single-Cell Analysis Toolkitβ116Sep 9, 2026Updated last week
- RAnking Markers for CEll Segmentationβ12Feb 22, 2022Updated 4 years ago
- β49Jun 3, 2026Updated 3 months ago
- Cell identification in high-resolution Spatial Transcriptomicsβ17Dec 3, 2025Updated 9 months ago
- A Python package using Gromov-Wasserstein distance to compare cell shapesβ26Jun 15, 2026Updated 3 months ago
- Publically accessible code for DIISCO methodβ13Oct 15, 2025Updated 11 months ago
- Flow & mass cytometry analytics.β60Sep 14, 2026Updated last week
- A simple and performant native R reader & writer for Zarr Arraysβ54Updated this week
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.β19Jun 9, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"β21Nov 27, 2025Updated 9 months ago
- Robust and scalable single-cell signature scoringβ29Sep 1, 2026Updated 2 weeks ago
- Pydantic models for OME-NGFFβ24Sep 14, 2025Updated last year
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seqβ16Dec 1, 2025Updated 9 months ago
- Minimum Information about Tissue Imagingβ21Oct 18, 2023Updated 2 years ago
- Tools for generating single-cell gene expression dataβ34Jun 20, 2025Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expressionβ46Jun 13, 2025Updated last year
- Image registration (alignment) software for large microscopy imagesβ27Oct 15, 2023Updated 2 years ago
- Imaris file format readerβ15Sep 1, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.β15Mar 26, 2026Updated 5 months ago
- β24Mar 22, 2023Updated 3 years ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)β461Aug 31, 2026Updated 3 weeks ago
- STREAM2: Fast, scalable, and interactive trajectory analysis of single-cell omics dataβ13Apr 1, 2024Updated 2 years ago
- Single-Cell Spatial Explorerβ15Dec 14, 2023Updated 2 years ago
- ATAC-seq lab for BIOINF525β10Mar 31, 2016Updated 10 years ago
- CAST packageβ43Oct 26, 2024Updated last year