Spatial analysis toolkit for single cell multiplexed tissue data
☆30Sep 2, 2024Updated 2 years ago
Alternatives and similar repositories for SpatialTis
Users that are interested in SpatialTis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆22Jun 9, 2025Updated last year
- Holoviz Anndata Interface☆14Updated this week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆59Sep 2, 2026Updated last month
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Aug 24, 2026Updated 2 months ago
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Jun 1, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆32May 27, 2025Updated last year
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆14Oct 17, 2024Updated 2 years ago
- Analysis framework for morphological profiling data☆14Updated this week
- Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)☆327Oct 24, 2026Updated last week
- ☆44May 11, 2026Updated 5 months ago
- Lightweight GPU-accelerated spatial operations for spatial omics, with CUDA kernels and Python APIs for point-in-polygon queries, overlap…☆14Updated this week
- ☆13Jun 18, 2026Updated 4 months ago
- An interface for Nested Stochastic Block Model for single cell analysis☆40Sep 2, 2026Updated last month
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SpotSweeper-py: Python version of SpotSweeper package☆11Sep 6, 2026Updated last month
- Flexible gene set enrichment analysis☆10Aug 30, 2021Updated 5 years ago
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆22Updated this week
- Lab for quantitative bioimage analysis experiments in Python☆21Oct 7, 2026Updated 3 weeks ago
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- Microscopy Image Cytometry Toolkit☆118Jul 15, 2022Updated 4 years ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆219Oct 2, 2026Updated 3 weeks ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆135May 29, 2025Updated last year
- ☆49Jun 3, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Spatial Single-Cell Analysis Toolkit☆116Updated this week
- Cell identification in high-resolution Spatial Transcriptomics☆17Oct 12, 2026Updated 2 weeks ago
- ☆12Oct 28, 2025Updated last year
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆28Oct 15, 2026Updated 2 weeks ago
- Robust and scalable single-cell signature scoring☆29Updated this week
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 11 months ago
- Quantification module for mcmicro☆11Apr 1, 2025Updated last year
- SQL dialect for genomic range operations☆10Sep 14, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated last year
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated last year
- Flow & mass cytometry analytics.☆61Oct 19, 2026Updated last week
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 3 years ago
- R API and htmlwidget for Vitessce☆46Aug 13, 2025Updated last year
- Enhanced stain normalization for histopathology images with batch processing support. Optimized for CPU, GPU (CUDA), and MPS (Apple Silic…☆26Aug 9, 2026Updated 2 months ago
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Mar 26, 2026Updated 7 months ago