Mr-Milk / SpatialTis
Spatial analysis toolkit for single cell multiplexed tissue data
β30Updated 2 months ago
Related projects β
Alternatives and complementary repositories for SpatialTis
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.β24Updated 2 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β50Updated 5 months ago
- β23Updated last month
- Analyzing cellular niches in spatial transcriptomics dataβ27Updated this week
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densβ¦β59Updated 2 years ago
- Probabilistic cell segmentation for in situ spatial transcriptomicsβ45Updated last week
- β28Updated last month
- β25Updated 5 years ago
- An R package for performing cell typing in SMI and other single cell dataβ29Updated 3 months ago
- Nonnegative spatial factorization for multivariate count dataβ57Updated last year
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systemsβ34Updated 2 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.β25Updated this week
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniquesβ14Updated 3 years ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.β92Updated last week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mappingβ69Updated 11 months ago
- Multimodal Data (.h5mu) implementation for Pythonβ78Updated last month
- β20Updated 2 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics dataβ70Updated 2 weeks ago
- MultiMAP for integration of single cell multi-omicsβ53Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.β36Updated 2 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.β38Updated 3 years ago
- β38Updated last month
- CeLEry: cell location recovery in single-cell RNA sequencingβ31Updated 6 months ago
- CAST packageβ25Updated 3 weeks ago
- Slides and Notebooks for scverse 2024β17Updated last month
- β45Updated 7 months ago
- β16Updated 2 months ago
- Quasilinear data representations for single-cell omics data analysisβ42Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2β29Updated 10 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.β50Updated 2 weeks ago