Spatial analysis toolkit for single cell multiplexed tissue data
☆30Sep 2, 2024Updated last year
Alternatives and similar repositories for SpatialTis
Users that are interested in SpatialTis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Jun 25, 2025Updated 9 months ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Oct 17, 2024Updated last year
- Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)☆309Feb 3, 2026Updated 2 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆31May 27, 2025Updated 10 months ago
- ☆13Dec 15, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Jun 1, 2021Updated 4 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆202Dec 10, 2024Updated last year
- An interface for Nested Stochastic Block Model for single cell analysis☆37Sep 30, 2025Updated 6 months ago
- Spatial Single-Cell Analysis Toolkit☆110Mar 11, 2026Updated last month
- Microscopy Image Cytometry Toolkit☆114Jul 15, 2022Updated 3 years ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆16Updated this week
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Automatically annotate cell types, consistently across samples.☆20Updated this week
- Package for the analysis of Transcripts outside segmented cells in ST data☆28Mar 30, 2026Updated last week
- ☆49Mar 12, 2026Updated 3 weeks ago
- A simple native R reader for Zarr Arrays☆49Updated this week
- Accessible and interoperable whole slide image analysis☆260Updated this week
- Flow & mass cytometry analytics.☆60Updated this week
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆19Jun 9, 2025Updated 10 months ago
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 6 months ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Static plotting for spatialdata☆76Apr 3, 2026Updated last week
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Jun 13, 2025Updated 9 months ago
- ATAC-seq lab for BIOINF525☆10Mar 31, 2016Updated 10 years ago
- ☆22Mar 22, 2023Updated 3 years ago
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- Imaris file format reader☆15Aug 20, 2025Updated 7 months ago
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated 9 months ago
- Single-Cell Spatial Explorer☆15Dec 14, 2023Updated 2 years ago
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Mar 26, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆427Mar 16, 2026Updated 3 weeks ago
- Single-cell spatial omics analysis that makes you happy!☆55Updated this week
- CAST package☆43Oct 26, 2024Updated last year
- Conditional Autoencoders for Multiplexed Pixel Analysis☆18Nov 25, 2022Updated 3 years ago
- Lab for quantitative bioimage analysis experiments in Python☆19Feb 16, 2026Updated last month
- STREAM2: Fast, scalable, and interactive trajectory analysis of single-cell omics data☆13Apr 1, 2024Updated 2 years ago
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆15Dec 1, 2025Updated 4 months ago