jbergenstrahle / STUtility
☆46Updated last year
Alternatives and similar repositories for STUtility:
Users that are interested in STUtility are comparing it to the libraries listed below
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 2 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 3 years ago
- SPATA Package for spatial gene expression analysis☆21Updated 2 years ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆23Updated 6 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 7 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆36Updated last month
- scWGCNA☆56Updated 2 years ago
- CAST package☆29Updated 3 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 months ago
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated this week
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆32Updated 4 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆47Updated last week
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆12Updated 3 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆23Updated last year
- ☆20Updated last year
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated 11 months ago
- Functions for single cell data analysis☆29Updated 3 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆49Updated 4 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆56Updated 4 months ago
- ☆39Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- .h5mu files interface for Seurat☆28Updated last year
- Spatially-resolved Transcriptomics via Epitope Anchoring☆18Updated 10 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆27Updated 8 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆14Updated 4 months ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year