jbergenstrahle / STUtilityLinks
☆52Updated 2 years ago
Alternatives and similar repositories for STUtility
Users that are interested in STUtility are comparing it to the libraries listed below
Sorting:
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆39Updated last month
- iterative clustering pipeline of big single cell datasets.☆33Updated 2 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆63Updated 2 weeks ago
- scWGCNA☆61Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 7 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆84Updated last month
- Aligning gene expression trajectories of single-cell reference and query systems☆68Updated 8 months ago
- ☆22Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- SPATA Package for spatial gene expression analysis☆21Updated 3 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆39Updated 2 weeks ago
- Single-cell Case Control Analysis☆50Updated 8 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated last month
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated this week
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- ☆34Updated last year
- ☆49Updated 11 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆48Updated 8 months ago
- ☆54Updated 11 months ago
- ☆41Updated 4 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 6 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year