jbergenstrahle / STUtility
☆51Updated 2 years ago
Alternatives and similar repositories for STUtility:
Users that are interested in STUtility are comparing it to the libraries listed below
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- An R package for handling and analysing imaging mass cytometry data☆26Updated 6 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated 3 weeks ago
- ☆22Updated 2 years ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆38Updated 4 months ago
- SPATA Package for spatial gene expression analysis☆22Updated 3 years ago
- scWGCNA☆59Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 10 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 10 months ago
- ☆49Updated 9 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 9 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 3 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- ☆24Updated 2 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆64Updated 6 months ago
- ☆22Updated last year
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated 3 weeks ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 10 months ago
- SCDC☆45Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆25Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 6 months ago
- Stitch multiple Visium slides together☆15Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆18Updated 7 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated last week
- ☆13Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Functions for single cell data analysis☆31Updated 3 years ago