brianpenghe / python-genomics
A set of files to do genomics analysis on python
☆18Updated 5 months ago
Alternatives and similar repositories for python-genomics:
Users that are interested in python-genomics are comparing it to the libraries listed below
- Multi-resolution Variational Inference☆22Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆36Updated 7 months ago
- Parse ArchR arrow files to anndata h5ad☆13Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆54Updated last month
- CAST package☆34Updated 6 months ago
- ☆48Updated last month
- ☆21Updated 2 years ago
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆21Updated 2 weeks ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆49Updated last week
- ☆39Updated this week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆34Updated this week
- ☆43Updated last year
- Web application demonstrating 3D modeling of spatial transcriptomics☆18Updated 4 months ago
- ☆35Updated 8 months ago
- inferring regulatory cellular dynamics☆41Updated this week
- Spatial direct messaging detected by bivariate Moran☆26Updated last week
- The scripts used for the analyses in TOME project☆24Updated 5 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆40Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- ☆26Updated last year
- Gene group activity utility functions for Scanpy☆74Updated 4 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- R implementation of GeneTrajectory☆58Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 10 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 9 months ago
- Single cell omics biology annotations☆51Updated 2 weeks ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆35Updated last year
- Python implementation of Gene Trajectory☆25Updated 8 months ago