A set of files to do genomics analysis on python
☆18Jun 5, 2025Updated 9 months ago
Alternatives and similar repositories for python-genomics
Users that are interested in python-genomics are comparing it to the libraries listed below
Sorting:
- Removing empty droplets in multiome datasets☆17Jun 3, 2024Updated last year
- ☆11Sep 17, 2020Updated 5 years ago
- Vaeda method for computational doublet annotation☆19Feb 1, 2026Updated last month
- ☆47Jan 28, 2026Updated last month
- ☆18Oct 22, 2024Updated last year
- The analysis pipeline for FLEP-seq☆17Aug 18, 2023Updated 2 years ago
- Spatial Single Cell transcriptomic library☆19Jan 15, 2026Updated 2 months ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- SPAtial Transcriptomics resource for subCellular and High-throughput platforms☆22Dec 10, 2024Updated last year
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Nov 26, 2023Updated 2 years ago
- Interactive visualisation of CellphoneDB results☆12Jan 15, 2025Updated last year
- ☆19Dec 15, 2023Updated 2 years ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Jan 12, 2024Updated 2 years ago
- Multi-resolution Variational Inference☆23Updated this week
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- A Reproducible Untargeted Metabolomics Data Processing Pipeline☆11Mar 18, 2021Updated 5 years ago
- Browser extension for accessing open data resources in the biomedical domain☆11Jan 8, 2023Updated 3 years ago
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Feb 7, 2022Updated 4 years ago
- Generate signature matrix from single cell data.☆11Apr 13, 2021Updated 4 years ago
- Interactive applications of stlearn☆15May 1, 2023Updated 2 years ago
- Simple scVI implementation☆12Mar 9, 2026Updated last week
- Pipeline for Universal Mapping of ATAC-seq☆26Sep 23, 2025Updated 5 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Fast algorithms for GLM-PCA.☆14Mar 12, 2025Updated last year
- ☆16Sep 1, 2023Updated 2 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆67Feb 11, 2026Updated last month
- A tool for semi-automatic cell type classification☆459Mar 13, 2026Updated last week
- Stitch multiple Visium slides together☆16Oct 16, 2025Updated 5 months ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- Web application demonstrating 3D modeling of spatial transcriptomics☆23Dec 9, 2024Updated last year
- MuDCoD: Multi-subject Dynamic Community Detection☆11Mar 18, 2025Updated last year
- Relates to the article by Lioy, Cournac et al., Cell, 2018 (Functional partitioning of a bacterial chromosome through the interplay of nu…☆11Aug 19, 2020Updated 5 years ago
- ☆14Mar 17, 2022Updated 4 years ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆23May 16, 2025Updated 10 months ago
- ChromSCape☆14Jul 30, 2025Updated 7 months ago
- Compute mean telomere length from Whole Genome Sequencing data.☆15Feb 15, 2024Updated 2 years ago
- ☆24Mar 3, 2026Updated 2 weeks ago
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago