Spatial alignment of single cell transcriptomic data.
☆355Jul 1, 2025Updated 8 months ago
Alternatives and similar repositories for Tangram
Users that are interested in Tangram are comparing it to the libraries listed below
Sorting:
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆417Updated this week
- Spatial mapping of cell types by integration of transcriptomics data☆100Jun 30, 2022Updated 3 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆438Jan 22, 2026Updated last month
- Spatial Single Cell Analysis in Python☆553Updated this week
- A novel machine learning pipeline to analyse spatial transcriptomics data☆241Feb 24, 2026Updated last week
- Spatiotemporal modeling of spatial transcriptomics☆328Feb 25, 2026Updated last week
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Feb 20, 2025Updated last year
- Spatial omics analysis toolbox☆362Feb 12, 2026Updated 3 weeks ago
- CellRank: dynamics from multi-view single-cell data☆431Updated this week
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆41Jul 1, 2024Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆100Feb 26, 2025Updated last year
- A toolkit of spatial transcriptomic analysis.☆274Feb 12, 2026Updated 3 weeks ago
- ☆128Mar 27, 2022Updated 3 years ago
- BANKSY: spatial clustering☆137Oct 15, 2025Updated 4 months ago
- ☆129Feb 11, 2024Updated 2 years ago
- An open and interoperable data framework for spatial omics data☆352Updated this week
- Spatial Transcriptomics Capture Location Deconvolution☆201Oct 20, 2025Updated 4 months ago
- Learning cell communication from spatial graphs of cells☆113Jan 15, 2024Updated 2 years ago
- A tool for semi-automatic cell type classification☆457Updated this week
- Reference mapping for single-cell genomics☆399Dec 2, 2025Updated 3 months ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆202Dec 10, 2024Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆620Nov 12, 2025Updated 3 months ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,573Updated this week
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆256Feb 9, 2026Updated 3 weeks ago
- ☆129Jun 10, 2022Updated 3 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆87Jun 7, 2022Updated 3 years ago
- ☆47Jul 24, 2025Updated 7 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆469Jun 6, 2025Updated 9 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆579Jun 26, 2025Updated 8 months ago
- ☆89Updated this week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆95Dec 11, 2023Updated 2 years ago
- data for spacejam2☆18Aug 3, 2022Updated 3 years ago
- Identify spatial domain☆89May 29, 2025Updated 9 months ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆263Feb 24, 2026Updated last week
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆182Aug 12, 2025Updated 6 months ago
- ☆14Feb 24, 2026Updated last week
- ☆132Apr 24, 2024Updated last year
- Code for the spatialLIBD R/Bioconductor package and shiny app☆109Jan 15, 2026Updated last month
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆488Feb 20, 2026Updated 2 weeks ago