broadinstitute / TangramLinks
Spatial alignment of single cell transcriptomic data.
☆311Updated last month
Alternatives and similar repositories for Tangram
Users that are interested in Tangram are comparing it to the libraries listed below
Sorting:
- A novel machine learning pipeline to analyse spatial transcriptomics data☆226Updated 3 weeks ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆370Updated last month
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆210Updated last month
- A tool for semi-automatic cell type classification☆394Updated last month
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆382Updated 2 weeks ago
- LIANA+: an all-in-one framework for cell-cell communication☆223Updated 3 weeks ago
- This is the alpha version of the CellOracle package☆372Updated 6 months ago
- Benchmarking analysis of data integration tools☆373Updated 6 months ago
- A toolkit of spatial transcriptomic analysis.☆257Updated last month
- Single-cell perturbation analysis☆193Updated last week
- ☆122Updated 3 years ago
- Scanpy Tutorials.☆219Updated last week
- Graph-linked unified embedding for single-cell multi-omics data integration☆419Updated last month
- Reference mapping for single-cell genomics☆375Updated 2 weeks ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆355Updated 5 months ago
- Spatial omics analysis toolbox☆312Updated last week
- Spatiotemporal modeling of spatial transcriptomics☆310Updated this week
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆212Updated this week
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆119Updated 2 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆231Updated 6 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆163Updated this week
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆222Updated last year
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆415Updated 2 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆89Updated 5 months ago
- Python package to perform enrichment analysis from omics data.☆215Updated this week
- Test genes for Spatial Variation☆174Updated last year
- ☆123Updated last year
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆231Updated last year
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆137Updated 2 years ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆184Updated 7 months ago