Alternatives and similar repositories for scp

Users that are interested in scp are comparing it to the libraries listed below

• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆23Updated 2 months ago
• statOmics / msqrob2
  Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure
  ☆12Updated last week
• broadinstitute / protigy
  Proteomics Toolset for Integrative Data Analysis
  ☆23Updated 2 months ago
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆15Updated last month
• saezlab / MetaProViz
  R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.
  ☆14Updated 2 weeks ago
• PennHui2016 / OpDEA
  A toolkit for optimal workflow recommendation for proteomics data differential expression analysis
  ☆16Updated 8 months ago
• bzhanglab / OmicsEV
  A tool for large scale omics datasets evaluation
  ☆25Updated 2 years ago
• Biobix / proteoformer
  Integration ribosome profiling - mass spectrometry
  ☆15Updated 3 months ago
• DavisLaboratory / vissE
  An R/Bioconductor package to identify higher-order molecular phenotypes
  ☆16Updated last year
• limin321 / stmut
  Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data
  ☆10Updated 7 months ago
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated 2 years ago
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated 3 weeks ago
• marcovito / sma
  ☆13Updated last year
• kmayerb / tcrdist2
  Quantifiable predictive features define epitope-specific T cell receptor repertoires
  ☆13Updated 2 years ago
• keyes-timothy / tidytof
  An R package for analyzing high-dimensional cytometry data using the tidyverse.
  ☆19Updated 10 months ago
• kentsisresearchgroup / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 6 years ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆51Updated 3 months ago
• pnnl / leapR
  ☆17Updated 2 weeks ago
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆21Updated 2 years ago
• showteeth / GEfetch2R
  GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
  ☆36Updated 2 months ago
• const-ae / proDA
  Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/
  ☆20Updated last year
• ProtProtocols / IsoProt
  Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering
  ☆12Updated 6 years ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆42Updated 2 weeks ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆61Updated this week
• JamesJoly / DGSEA
  An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…
  ☆13Updated 2 years ago
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆10Updated 8 months ago
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆26Updated last year
• bzhanglab / PepQuery
  PepQuery: a targeted peptide search engine
  ☆12Updated last year
• marcottelab / protein_complex_maps_public
  Public repository for building and analyzing protein complex maps
  ☆11Updated 8 years ago
• klarman-cell-observatory / perturbseq
  Perturb-seq analysis package
  ☆14Updated last year