Single cell proteomics data processing
☆32Apr 6, 2026Updated last month
Alternatives and similar repositories for scp
Users that are interested in scp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- python scripts for proteogenomics analysis☆10Oct 17, 2019Updated 6 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 3 years ago
- Integration ribosome profiling - mass spectrometry☆15Nov 4, 2025Updated 6 months ago
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 7 years ago
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆20Apr 28, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆41May 6, 2024Updated 2 years ago
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Apr 24, 2026Updated 2 weeks ago
- ☆17Sep 13, 2024Updated last year
- A library for QC report based on MultiQC framework☆30Apr 14, 2026Updated 3 weeks ago
- PIA - Protein Inference Algorithms☆25Apr 14, 2026Updated 3 weeks ago
- Github repository for nanoSPLITS manuscript data and R scripts☆10Oct 11, 2024Updated last year
- Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an …☆12Apr 5, 2023Updated 3 years ago
- Open-source java library to handle different file format standards for proteomics. Specially ms-data-core-api is good for MetaData repres…☆12Oct 23, 2019Updated 6 years ago
- An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics☆19Oct 2, 2025Updated 7 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- IPAW: a Nextflow workflow for proteogenomics☆29Aug 8, 2024Updated last year
- scMODAL: A general deep learning framework for single-cell Multi-Omics Data Alignment with feature Links☆23Jun 10, 2025Updated 10 months ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆39Apr 10, 2026Updated 3 weeks ago
- Python playground for cell-type-specific biology☆12Apr 8, 2026Updated last month
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Sep 30, 2022Updated 3 years ago
- ☆16Sep 29, 2023Updated 2 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- ☆19Feb 5, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11May 30, 2023Updated 2 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆75Apr 21, 2026Updated 2 weeks ago
- R functions underlying OmicsNet☆20Apr 21, 2026Updated 2 weeks ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆14Dec 5, 2025Updated 5 months ago
- ☆21Jan 20, 2026Updated 3 months ago
- SDRF official validator and converts SDRF to pipeline configuration files☆32Updated this week
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- Interactive software tool for the assignment of cell types in single-cell studies.☆34Apr 14, 2023Updated 3 years ago
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11Dec 27, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆59Jan 2, 2024Updated 2 years ago
- ☆29Mar 16, 2023Updated 3 years ago
- scAB detects multiresolution cell states with clinical significance☆22Nov 14, 2022Updated 3 years ago
- ☆22Feb 27, 2026Updated 2 months ago
- cell type specific, trait-associated gene regulation☆30Mar 31, 2025Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Apr 13, 2021Updated 5 years ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 10 months ago