Alternatives and similar repositories for scp

Users that are interested in scp are comparing it to the libraries listed below

• keyes-timothy / tidytof
  An R package for analyzing high-dimensional cytometry data using the tidyverse.
  ☆19Updated last year
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆25Updated last week
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆46Updated last year
• JamesJoly / DGSEA
  An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…
  ☆14Updated 2 years ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆22Updated 3 years ago
• GfellerLab / MetacellAnalysisToolkit
  Toolkit for metacell analysis
  ☆21Updated last year
• marcovito / sma
  ☆13Updated 2 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• showteeth / GEfetch2R
  GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
  ☆36Updated 4 months ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• dbdimitrov / BingleSeq
  BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses
  ☆22Updated 4 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• satijalab / azimuth-references
  ☆24Updated 3 months ago
• sellerslab / gemini
  GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens
  ☆16Updated 2 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 2 years ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆57Updated last year
• DavisLaboratory / vissE
  An R/Bioconductor package to identify higher-order molecular phenotypes
  ☆18Updated last year
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆37Updated last month
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆19Updated 6 months ago
• satijalab / Mixscale
  ☆19Updated 4 months ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆63Updated last month
• wwylab / DeMixT
  ☆36Updated last year
• alexQiSong / scSTEM
  Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…
  ☆18Updated 3 years ago
• salzman-lab / SICILIAN
  ☆22Updated last year
• bzhanglab / OmicsEV
  A tool for large scale omics datasets evaluation
  ☆25Updated 2 years ago
• UCLouvain-CBIO / depmap
  Cancer Dependency Map package
  ☆30Updated last year
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆11Updated 10 months ago
• slowkow / cellguide
  🧭 Navigate single-cell RNA-seq datasets in your web browser.
  ☆29Updated 2 years ago
• almeidasilvaf / BioNERO
  Easy and comprehensive biological network reconstruction and analysis
  ☆31Updated 10 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last week