JEFworks-Lab / MERmaidLinks
WebGL-based viewer for spatially-resolved transcriptomics data
☆28Updated 2 years ago
Alternatives and similar repositories for MERmaid
Users that are interested in MERmaid are comparing it to the libraries listed below
Sorting:
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Updated 3 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Updated 7 months ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆64Updated last month
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 9 months ago
- kallisto index tag extractor☆20Updated 6 years ago
- User-friendly Bioinformatics Tools☆18Updated 4 years ago
- Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format☆37Updated 11 months ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Analyzing cellular niches in spatial transcriptomics data☆33Updated last year
- Single cell interactive plotting tools☆24Updated 5 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- script + metadata = standalone component☆44Updated 3 weeks ago
- R API and htmlwidget for Vitessce☆44Updated 4 months ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 3 years ago
- Tools for analyzing Slide-seq data☆31Updated 2 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- ☆12Updated 2 years ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆50Updated last year
- An R package for performing cell typing in SMI and other single cell data☆45Updated 7 months ago
- Universal RObust Peak Annotator☆16Updated 2 years ago
- scRNAseq integration with triplet neural networks☆41Updated 3 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated 3 weeks ago
- Interactive visualisation of CellphoneDB results☆11Updated 11 months ago
- Paired Genomic Loci Tool Suite☆34Updated 3 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 6 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆61Updated 5 years ago
- Spatial omics analysis and visualization library☆22Updated this week
- A performant scientific image visualization system.☆36Updated 3 weeks ago