JEFworks-Lab / MERmaidLinks
WebGL-based viewer for spatially-resolved transcriptomics data
☆26Updated 2 years ago
Alternatives and similar repositories for MERmaid
Users that are interested in MERmaid are comparing it to the libraries listed below
Sorting:
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 2 months ago
- kallisto index tag extractor☆20Updated 5 years ago
- User-friendly Bioinformatics Tools☆18Updated 4 years ago
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Updated 2 years ago
- ☆12Updated last year
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Updated last month
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆21Updated last week
- R API and htmlwidget for Vitessce☆40Updated 7 months ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last week
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 6 months ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆22Updated 5 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Updated 5 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Paired Genomic Loci Tool Suite☆30Updated 2 years ago
- Dimensionality reduction for single cell RNA-seq data☆35Updated 5 years ago
- ☆10Updated 8 years ago
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆32Updated 3 years ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- ☆44Updated last week
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago