R API and htmlwidget for Vitessce
☆45Aug 13, 2025Updated 9 months ago
Alternatives and similar repositories for vitessceR
Users that are interested in vitessceR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆251Updated this week
- ☆15Mar 7, 2026Updated 2 months ago
- Python API and Jupyter widget for Vitessce☆66Apr 17, 2026Updated last month
- Single-cell analysis with non-negative matrix factorization☆48Jul 24, 2025Updated 9 months ago
- Bringing core concepts from anywidget to R☆21Aug 10, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- HuBMAP Data Portal front end☆13May 13, 2026Updated last week
- A simple native R reader for Zarr Arrays☆50Updated this week
- Python package to interactively annotate histological images within a jupyter notebook☆18Oct 20, 2025Updated 7 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 5 months ago
- Spatial omics analysis and visualization library☆24May 11, 2026Updated last week
- Agglomerative hierarchical clustering in JavaScript☆19Dec 17, 2024Updated last year
- Spatial omics analysis toolbox☆374May 15, 2026Updated last week
- ☆73May 28, 2025Updated 11 months ago
- wrapping z5 in R☆17Nov 25, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R interface to 'Gos'☆38Feb 23, 2023Updated 3 years ago
- single nuclei RNA-seq analysis toolbox☆10Oct 26, 2016Updated 9 years ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆32Jun 19, 2024Updated last year
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆100Nov 24, 2025Updated 5 months ago
- Slice into Zarr arrays in R 🍕☆43May 16, 2026Updated last week
- ☆18Mar 31, 2024Updated 2 years ago
- AI-Driven Code Generation, Explanation and Execution for Data Analysis☆24Sep 11, 2024Updated last year
- Extension of SpatialExperiment with sf☆57May 6, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆43Mar 2, 2025Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆35Nov 18, 2024Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆240Aug 7, 2024Updated last year
- End-to-end pipeline for segmenting cell nuclei on histology slides☆16Jul 19, 2022Updated 3 years ago
- From geospatial to spatial -omics☆103May 8, 2026Updated 2 weeks ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆24Jan 5, 2023Updated 3 years ago
- Interface to the Bioformats Java library☆14Feb 17, 2026Updated 3 months ago
- ☆28Updated this week
- Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.☆347May 11, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- .h5mu files interface for Seurat☆33Nov 28, 2023Updated 2 years ago
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated 2 months ago
- ☆14Feb 12, 2026Updated 3 months ago
- Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots☆31Dec 1, 2021Updated 4 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- BIRDS plug-in on Fiji and attached jar package☆22Oct 7, 2021Updated 4 years ago
- BANKSY: spatial clustering☆147May 2, 2026Updated 3 weeks ago