dyxmvp / Spatial_ATAC-seq
☆22Updated 2 years ago
Alternatives and similar repositories for Spatial_ATAC-seq:
Users that are interested in Spatial_ATAC-seq are comparing it to the libraries listed below
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆27Updated 4 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated last month
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆33Updated this week
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- ☆24Updated last month
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆35Updated 4 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 3 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆63Updated 5 months ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆25Updated 8 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated last month
- Spatial transcriptomics of heart tissue☆20Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 5 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 9 months ago
- Functions for single cell data analysis☆31Updated 3 years ago
- CAST package☆33Updated 5 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆9Updated 6 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 4 months ago
- Single-Cell Inference of Class Switch Recombination☆19Updated 2 weeks ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆29Updated 7 months ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆19Updated last week
- ☆13Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated 6 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- ☆10Updated last year