Alternatives and similar repositories for glow

Users that are interested in glow are comparing it to the libraries listed below

• bigdatagenomics / mango
  A scalable genome browser. Apache 2 licensed.
  ☆125Updated 2 years ago
• aehrc / VariantSpark
  machine learning for genomic variants
  ☆145Updated 8 months ago
• Intel-HLS / GenomicsDB
  GenomicsDB
  ☆111Updated 2 years ago
• broadgsa / gatk
  Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…
  ☆294Updated 6 years ago
• GenomicsDB / GenomicsDB
  High performance data storage for importing, querying and transforming variants.
  ☆98Updated last month
• bigdatagenomics / adam
  ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 li…
  ☆1,026Updated last month
• fulcrumgenomics / fgbio
  Tools for working with genomic and high throughput sequencing data.
  ☆332Updated last week
• googlegenomics / gcp-variant-transforms
  GCP Variant Transforms
  ☆138Updated this week
• sgkit-dev / sgkit
  Scalable genetics toolkit
  ☆257Updated 3 weeks ago
• opencb / opencga
  An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …
  ☆171Updated this week
• cggh / scikit-allel
  A Python package for exploring and analysing genetic variation data
  ☆297Updated 3 weeks ago
• HadoopGenomics / Hadoop-BAM
  Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework
  ☆70Updated 2 years ago
• Illumina / hap.py
  Haplotype VCF comparison tools
  ☆434Updated last year
• nextflow-io / patterns
  A curated collection of Nextflow implementation patterns
  ☆363Updated last year
• samtools / htsjdk
  A Java API for high-throughput sequencing data (HTS) formats.
  ☆285Updated 2 weeks ago
• pcingola / SnpEff
  ☆279Updated 4 months ago
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆151Updated 4 months ago
• brentp / cyvcf2
  cython + htslib == fast VCF and BCF processing
  ☆403Updated 9 months ago
• pezmaster31 / bamtools
  C++ API & command-line toolkit for working with BAM data
  ☆425Updated last month
• hail-is / hail
  Cloud-native genomic dataframes and batch computing
  ☆1,012Updated last week
• lindenb / jvarkit
  Java utilities for Bioinformatics
  ☆503Updated last week
• amplab / snap
  Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
  ☆293Updated last month
• broadinstitute / genomics-in-the-cloud
  Source code and related materials for the O'Reilly book
  ☆96Updated 2 years ago
• bigdatagenomics / avocado
  A Variant Caller, Distributed. Apache 2 licensed.
  ☆71Updated 6 years ago
• macarthur-lab / gene_lists
  List of gene lists for genomic analyses.
  ☆221Updated 3 years ago
• bigdatagenomics / cannoli
  Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
  ☆41Updated 3 months ago
• ga4gh / benchmarking-tools
  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
  ☆202Updated 4 years ago
• TileDB-Inc / TileDB-VCF
  Efficient variant-call data storage and retrieval library using the TileDB storage library.
  ☆93Updated 2 weeks ago
• samtools / hts-specs
  Specifications of SAM/BAM and related high-throughput sequencing file formats
  ☆678Updated last week
• google / deepconsensus
  DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …
  ☆240Updated 3 months ago