lifeomic / spark-vcfLinks
Spark VCF data source implementation for Dataframes
☆14Updated 3 years ago
Alternatives and similar repositories for spark-vcf
Users that are interested in spark-vcf are comparing it to the libraries listed below
Sorting:
- Easily run WDL workflows on GCP☆14Updated 3 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 9 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11Updated 8 years ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated 9 months ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 7 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last month
- python script to programmatically enrich your data using Enrichr API☆12Updated 8 years ago
- Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.☆20Updated 4 years ago
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows☆14Updated 7 years ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Updated 3 years ago
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Updated 7 years ago
- Finding cryptic relationships to boost disease gene detection☆12Updated 2 years ago
- Encore Analysis Server☆13Updated 4 months ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Updated 8 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 6 months ago
- Workflow Description Language compiler for the DNAnexus platform☆42Updated 2 years ago
- Aligner for sequencing data☆18Updated 7 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 3 years ago
- Library of snakemake rules.☆12Updated 6 years ago
- Build an index for your BAM Index (BAI)☆17Updated 10 years ago
- TheSparkBox is an all-in-one Spark deployment that you can use to fire up a local cluster.☆12Updated 7 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 9 years ago
- Parallel Genomic Analysis Toolkit☆14Updated 6 years ago
- Docker images of bioinformatics software☆21Updated 8 years ago