Spark VCF data source implementation for Dataframes
☆15Jul 15, 2022Updated 3 years ago
Alternatives and similar repositories for spark-vcf
Users that are interested in spark-vcf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Finding a scalable alternative to the VCF File for genomics analysis☆14Jan 5, 2017Updated 9 years ago
- List of conferences with talk videos posted online☆12Sep 23, 2023Updated 2 years ago
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Apr 26, 2017Updated 9 years ago
- convert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations☆61Sep 16, 2019Updated 6 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14May 20, 2016Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Mar 17, 2026Updated last month
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- A GWAS course☆12Nov 4, 2021Updated 4 years ago
- PRINCESS source code☆11Oct 15, 2016Updated 9 years ago
- ☆15Jan 16, 2018Updated 8 years ago
- A python package from Pacific Biosciences to analyze centromeric sequences☆21Oct 7, 2015Updated 10 years ago
- Load genomic BAM files using Apache Spark☆21Jun 17, 2018Updated 7 years ago
- ☆12Feb 4, 2026Updated 3 months ago
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Aug 25, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 4 years ago
- Making Databricks easy to use for R developers.☆26Oct 6, 2022Updated 3 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Aug 9, 2022Updated 3 years ago
- ☆13Feb 10, 2021Updated 5 years ago
- Gene Exploration System for Variance☆22Dec 8, 2022Updated 3 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Feb 26, 2019Updated 7 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Mar 10, 2018Updated 8 years ago
- Examples of using CloudML with genomic data.☆18May 24, 2019Updated 6 years ago
- ☆32Dec 3, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Some extra functionality that is not (yet) in dplyr, e.g. mutate_rows or s_filter, s_arrange ,...☆20May 18, 2020Updated 5 years ago
- Public Health England SNP calling pipeline.☆37Sep 4, 2018Updated 7 years ago
- A source code to replicate Sakaue S. et al. Nat Commun. 2020.☆15Oct 29, 2020Updated 5 years ago
- Tool to import data in bulk into CosmosDB from Azure data lake and Azure blob storage☆11Jun 14, 2023Updated 2 years ago
- machine learning for genomic variants☆147Apr 29, 2026Updated last week
- Visualize (.avdl and .proto format) schema files as a UML diagram using Graphviz☆30May 30, 2018Updated 7 years ago
- ☆17Sep 14, 2023Updated 2 years ago
- Finding cryptic relationships to boost disease gene detection☆12May 31, 2023Updated 2 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Sep 24, 2018Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Efficient variant-call data storage and retrieval library using the TileDB storage library.☆108Apr 13, 2026Updated 3 weeks ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- Clojure lens library, implements a small subset of ekmett's lens☆12Nov 29, 2018Updated 7 years ago
- GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular …☆45Apr 28, 2026Updated last week
- A simple utility for easy sleep.☆14Jul 1, 2020Updated 5 years ago
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- A better #! runner than /usr/bin/env☆22Jun 22, 2012Updated 13 years ago