Cloud-native genomic dataframes and batch computing
☆1,064Jun 9, 2026Updated this week
Alternatives and similar repositories for hail
Users that are interested in hail are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cython + htslib == fast VCF and BCF processing☆445May 14, 2026Updated last month
- Official code repository for GATK versions 4 and up☆1,965Updated this week
- annotate a VCF with other VCFs/BEDs/tabixed files☆407May 1, 2026Updated last month
- DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.☆3,727Mar 19, 2026Updated 2 months ago
- GenomicsDB☆109Jan 3, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Hail helper functions for the gnomAD project and Translational Genomics Group☆101Updated this week
- ☆197Jun 20, 2023Updated 2 years ago
- ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 li…☆1,053Mar 17, 2026Updated 2 months ago
- Scalable genetics toolkit☆277Mar 2, 2026Updated 3 months ago
- Scripts for working with Google Cloud Dataproc service☆37Jun 19, 2019Updated 6 years ago
- An open-source toolkit for large-scale genomic analysis☆303Jun 7, 2026Updated last week
- web-based analysis tool for rare disease genomics☆207Updated this week
- Python and C++ code for reading and writing genomics data.☆800Dec 9, 2021Updated 4 years ago
- Tools for working with SAM/BAM data☆610Dec 22, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- High performance data storage for importing, querying and transforming variants.☆99May 15, 2025Updated last year
- Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release☆383Jun 7, 2023Updated 3 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆185Apr 12, 2024Updated 2 years ago
- A genotype query interface.☆136Mar 29, 2021Updated 5 years ago
- tools for working with genome variation graphs☆1,322Jun 8, 2026Updated last week
- a lightweight db framework for exploring genetic variation.☆329Apr 28, 2020Updated 6 years ago
- A Python package for exploring and analysing genetic variation data☆316Jun 1, 2026Updated 2 weeks ago
- Rare variant test software for next generation sequencing data☆143Jan 26, 2022Updated 4 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆858May 2, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆559Updated this week
- Plot structural variant signals from many BAMs and CRAMs☆567Jul 13, 2024Updated last year
- Haplotype VCF comparison tools☆469Dec 7, 2023Updated 2 years ago
- Explore gnomAD datasets on the web☆88Jun 8, 2026Updated last week
- PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a c…☆501Jun 6, 2026Updated last week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,461Updated this week
- Flexible genotype query among 30,000+ samples whole-genome☆94Sep 4, 2019Updated 6 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,030Aug 24, 2024Updated last year
- machine learning for genomic variants☆147Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Tools to process and analyze deep sequencing data.☆761Jul 23, 2025Updated 10 months ago
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆1,070Updated this week
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆724Jun 1, 2026Updated 2 weeks ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆894Jun 3, 2026Updated last week
- Bayesian haplotype-based mutation calling☆324Feb 13, 2026Updated 4 months ago
- Personal Cancer Genome Reporter (PCGR)☆279Updated this week
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated 9 months ago