Cloud-native genomic dataframes and batch computing
☆1,060May 20, 2026Updated this week
Alternatives and similar repositories for hail
Users that are interested in hail are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cython + htslib == fast VCF and BCF processing☆441May 14, 2026Updated last week
- Official code repository for GATK versions 4 and up☆1,950Updated this week
- annotate a VCF with other VCFs/BEDs/tabixed files☆404May 1, 2026Updated 3 weeks ago
- DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.☆3,707Mar 19, 2026Updated 2 months ago
- GenomicsDB☆109Jan 3, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Hail helper functions for the gnomAD project and Translational Genomics Group☆100May 18, 2026Updated last week
- ☆195Jun 20, 2023Updated 2 years ago
- ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 li…☆1,051Mar 17, 2026Updated 2 months ago
- Scalable genetics toolkit☆276Mar 2, 2026Updated 2 months ago
- Scripts for working with Google Cloud Dataproc service☆37Jun 19, 2019Updated 6 years ago
- An open-source toolkit for large-scale genomic analysis☆301May 17, 2026Updated last week
- web-based analysis tool for rare disease genomics☆204May 18, 2026Updated last week
- Python and C++ code for reading and writing genomics data.☆799Dec 9, 2021Updated 4 years ago
- Tools for working with SAM/BAM data☆610Dec 22, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- High performance data storage for importing, querying and transforming variants.☆99May 15, 2025Updated last year
- Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release☆383Jun 7, 2023Updated 2 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆183Apr 12, 2024Updated 2 years ago
- A genotype query interface.☆136Mar 29, 2021Updated 5 years ago
- tools for working with genome variation graphs☆1,320Updated this week
- a lightweight db framework for exploring genetic variation.☆328Apr 28, 2020Updated 6 years ago
- A Python package for exploring and analysing genetic variation data☆316May 1, 2026Updated 3 weeks ago
- Rare variant test software for next generation sequencing data☆142Jan 26, 2022Updated 4 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆851May 2, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆552Apr 13, 2026Updated last month
- Plot structural variant signals from many BAMs and CRAMs☆567Jul 13, 2024Updated last year
- Haplotype VCF comparison tools☆467Dec 7, 2023Updated 2 years ago
- Explore gnomAD datasets on the web☆88Updated this week
- PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a c…☆499May 16, 2026Updated last week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,451Updated this week
- Flexible genotype query among 30,000+ samples whole-genome☆94Sep 4, 2019Updated 6 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,031Aug 24, 2024Updated last year
- machine learning for genomic variants☆147Apr 29, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools to process and analyze deep sequencing data.☆760Jul 23, 2025Updated 10 months ago
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆1,064Updated this week
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆720May 13, 2026Updated last week
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆891Updated this week
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated 3 months ago
- Personal Cancer Genome Reporter (PCGR)☆278Updated this week
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated 9 months ago