disq-bio / disqLinks
A library for manipulating bioinformatics sequencing formats in Apache Spark
☆32Updated last month
Alternatives and similar repositories for disq
Users that are interested in disq are comparing it to the libraries listed below
Sorting:
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Updated 6 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Allele frequency filter app☆14Updated 3 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Updated 10 months ago
- A tutorial for DLS-2 migration☆28Updated 6 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Genomic VCF to tab-separated values☆48Updated 2 years ago
- hail-based pipelines for annotating variant callsets and exporting them to elasticsearch☆23Updated this week
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆29Updated last month
- Easily run WDL workflows on GCP☆14Updated 4 years ago
- SEQSpark documentation☆18Updated 5 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Updated 9 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 5 years ago
- Variant catalogue pipeline☆26Updated last week
- ☆22Updated 2 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…☆33Updated 4 years ago
- ☆29Updated 4 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Updated 4 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Updated 2 years ago
- Keep Me Around: Intron Retention Detection☆30Updated 6 years ago