disq-bio / disqView external linksLinks
A library for manipulating bioinformatics sequencing formats in Apache Spark
☆32Dec 16, 2025Updated last month
Alternatives and similar repositories for disq
Users that are interested in disq are comparing it to the libraries listed below
Sorting:
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Mar 2, 2025Updated 11 months ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- ☆15Jan 16, 2018Updated 8 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- MaRe leverages the power of Docker and Spark to run and scale your serial tools in MapReduce fashion.☆14Apr 12, 2022Updated 3 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Mar 24, 2019Updated 6 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Jun 13, 2025Updated 8 months ago
- High performance data storage for importing, querying and transforming variants.☆99May 15, 2025Updated 9 months ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Jan 15, 2026Updated last month
- An open-source toolkit for large-scale genomic analysis☆293Feb 8, 2026Updated last week
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆27May 13, 2025Updated 9 months ago
- Docker containers for bioinformatics with a small footprint☆23Dec 18, 2025Updated last month
- Deep learning-based structural variant filtering method☆39Nov 19, 2023Updated 2 years ago
- Structural variant (SV) analysis tools☆40Jul 1, 2024Updated last year
- A nextflow pipeline for calling exome CNVs☆13Feb 9, 2026Updated last week
- ☆11Nov 22, 2024Updated last year
- A Nextflow pipeline to play Doom☆10Dec 1, 2025Updated 2 months ago
- ☆15Apr 2, 2025Updated 10 months ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆72Dec 2, 2022Updated 3 years ago
- machine learning for genomic variants☆147Updated this week
- Web application to collect and visualise data across multiple MultiQC runs.☆95Dec 13, 2024Updated last year
- A web tool that helps biomedical researchers understand how their work is being used by others, by analyzing the content in papers that c…☆13Oct 19, 2018Updated 7 years ago
- ☆12Jun 18, 2022Updated 3 years ago
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11May 9, 2024Updated last year
- Recommendations to contenarized your bioinformatics software☆11May 30, 2018Updated 7 years ago
- A GWAS course☆12Nov 4, 2021Updated 4 years ago
- A translator from WDL to CWL v1.2☆27Jan 19, 2026Updated 3 weeks ago
- ☆12Sep 27, 2023Updated 2 years ago
- Intersect multiple VCF files with haplotype awareness☆26Mar 14, 2021Updated 4 years ago
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆19Jan 15, 2026Updated last month
- A method to improve mappings on circular genomes, using the BWA mapper☆10Mar 4, 2022Updated 3 years ago
- Tools for working with genomic and high throughput sequencing data.☆353Jan 26, 2026Updated 3 weeks ago
- ☆29Feb 17, 2021Updated 4 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆32Jan 22, 2016Updated 10 years ago
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Jan 5, 2026Updated last month
- A scalable genome browser. Apache 2 licensed.☆126Dec 2, 2022Updated 3 years ago
- Python client for Marquez☆12Dec 4, 2020Updated 5 years ago
- An analysis pipeline for Nanostring nCounter expression data.☆17Jan 30, 2026Updated 2 weeks ago