fulcrumgenomics / fgbioView external linksLinks
Tools for working with genomic and high throughput sequencing data.
☆353Jan 26, 2026Updated 3 weeks ago
Alternatives and similar repositories for fgbio
Users that are interested in fgbio are comparing it to the libraries listed below
Sorting:
- VarDict☆201Jan 5, 2024Updated 2 years ago
- VarDict Java port☆138Jan 5, 2024Updated 2 years ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆536Feb 2, 2026Updated 2 weeks ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆279May 21, 2025Updated 8 months ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆396Aug 30, 2025Updated 5 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆332May 27, 2025Updated 8 months ago
- Haplotype VCF comparison tools☆455Dec 7, 2023Updated 2 years ago
- The D4 Quantitative Data Format☆169Nov 28, 2025Updated 2 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Apr 9, 2021Updated 4 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆507Nov 6, 2025Updated 3 months ago
- Per-base per-nucleotide depth analysis☆146Feb 4, 2026Updated last week
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Jun 22, 2022Updated 3 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆822Updated this week
- The next version of bwa-mem☆817Oct 15, 2025Updated 4 months ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Jan 29, 2026Updated 2 weeks ago
- Strelka2 germline and somatic small variant caller☆389Dec 29, 2021Updated 4 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆247Oct 18, 2024Updated last year
- Tools for working with SAM/BAM data☆605Dec 22, 2024Updated last year
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆224Sep 18, 2025Updated 4 months ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆303Nov 14, 2025Updated 3 months ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆199Mar 20, 2024Updated last year
- lumpy: a general probabilistic framework for structural variant discovery☆338Jun 7, 2022Updated 3 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99May 21, 2024Updated last year
- cython + htslib == fast VCF and BCF processing☆427Oct 13, 2025Updated 4 months ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆409Aug 2, 2025Updated 6 months ago
- Bayesian haplotype-based mutation calling☆323Updated this week
- Various algorithms for analysing genomics data☆264Updated this week
- Fast and accurate gene fusion detection from RNA-Seq data☆259Sep 21, 2025Updated 4 months ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,283Jan 22, 2026Updated 3 weeks ago
- using all the bits for echt rapid variant annotation and filtering☆153Updated this week
- The nimble & robust variant annotator☆190Apr 25, 2024Updated last year
- Structural variant and indel caller for mapped sequencing data☆458Oct 11, 2025Updated 4 months ago
- Java utilities for Bioinformatics☆516Feb 6, 2026Updated last week
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Jan 6, 2021Updated 5 years ago
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 3 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆203Jan 5, 2026Updated last month