fulcrumgenomics / fgbio
Tools for working with genomic and high throughput sequencing data.
☆324Updated this week
Alternatives and similar repositories for fgbio:
Users that are interested in fgbio are comparing it to the libraries listed below
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆267Updated last year
- ☆265Updated last month
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆460Updated 3 weeks ago
- Plot structural variant signals from many BAMs and CRAMs☆540Updated 8 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆311Updated 9 months ago
- Count bases in BAM/CRAM files☆314Updated 3 years ago
- Annotation and Ranking of Structural Variation☆248Updated 2 weeks ago
- Fast and accurate gene fusion detection from RNA-Seq data☆235Updated this week
- This Snakemake pipeline implements the GATK best-practices workflow☆250Updated last year
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆201Updated 4 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆371Updated last year
- A structural variation pipeline for short-read sequencing☆183Updated this week
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆216Updated 3 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆209Updated 4 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆267Updated last month
- Strelka2 germline and somatic small variant caller☆366Updated 3 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆355Updated 2 years ago
- An overview of all nanopack tools☆237Updated last year
- Transcript assembly and quantification for RNA-Seq☆423Updated this week
- structural variant calling and genotyping with existing tools, but, smoothly.☆248Updated 9 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆276Updated 5 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆208Updated 3 weeks ago
- Toolset for SV simulation, comparison and filtering☆374Updated last year
- Nanopore demultiplexing, QC and alignment pipeline☆194Updated last month
- VarDict☆194Updated last year
- TransDecoder source☆286Updated 5 months ago
- Structural variation caller using third generation sequencing☆583Updated 2 weeks ago
- SUPPA: Fast quantification of splicing and differential splicing☆272Updated 9 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- A tool for estimating repeat sizes☆191Updated last year