fulcrumgenomics / fgbioLinks
Tools for working with genomic and high throughput sequencing data.
☆332Updated this week
Alternatives and similar repositories for fgbio
Users that are interested in fgbio are comparing it to the libraries listed below
Sorting:
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- ☆279Updated 4 months ago
- Annotation and Ranking of Structural Variation☆260Updated 3 months ago
- Plot structural variant signals from many BAMs and CRAMs☆543Updated 11 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆269Updated last month
- Fast and accurate gene fusion detection from RNA-Seq data☆243Updated 3 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆377Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆254Updated 2 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆319Updated 3 weeks ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆269Updated last year
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆196Updated 2 weeks ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆253Updated last year
- A structural variation pipeline for short-read sequencing☆189Updated this week
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆473Updated this week
- SUPPA: Fast quantification of splicing and differential splicing☆275Updated last year
- Java utilities for Bioinformatics☆503Updated last week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆215Updated 2 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- A tool for estimating repeat sizes☆195Updated last year
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆202Updated 4 years ago
- Genome Assembly and Annotation Service code☆212Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆234Updated 4 years ago
- Full-Length Alternative Isoform analysis of RNA☆229Updated last week
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆210Updated 5 years ago
- Web application to explore the Sequence Read Archive.☆218Updated 2 months ago
- An overview of all nanopack tools☆257Updated 2 years ago
- STAR-Fusion codebase☆243Updated last month
- VarDict☆198Updated last year
- TransDecoder source☆291Updated 8 months ago