fulcrumgenomics / fgbioLinks
Tools for working with genomic and high throughput sequencing data.
☆350Updated last week
Alternatives and similar repositories for fgbio
Users that are interested in fgbio are comparing it to the libraries listed below
Sorting:
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆279Updated 7 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆329Updated 7 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆262Updated 2 years ago
- Count bases in BAM/CRAM files☆322Updated 3 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆257Updated 3 months ago
- ☆297Updated 2 weeks ago
- Various algorithms for analysing genomics data☆261Updated this week
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆499Updated last month
- annotate a VCF with other VCFs/BEDs/tabixed files☆391Updated 3 months ago
- Annotation and Ranking of Structural Variation☆276Updated 2 months ago
- Plot structural variant signals from many BAMs and CRAMs☆557Updated last year
- Full-Length Alternative Isoform analysis of RNA☆245Updated 2 weeks ago
- A structural variation pipeline for short-read sequencing☆199Updated this week
- VarDict☆201Updated last year
- Strelka2 germline and somatic small variant caller☆389Updated 3 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆284Updated 10 months ago
- parallel fastq-dump wrapper☆301Updated 2 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆299Updated last month
- BEDOPS: high-performance genomic feature operations☆356Updated 7 months ago
- This repository contains data indexes from NIST's Genome in a Bottle project.☆261Updated 2 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆208Updated 4 years ago
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆159Updated 3 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆231Updated 3 years ago
- Documentation for the ANNOVAR software☆245Updated 4 months ago
- The nimble & robust variant annotator☆188Updated last year
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆395Updated last month
- A tool for estimating repeat sizes☆200Updated last year
- A flexible framework for rapid genome analysis and interpretation☆317Updated 3 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq