Tools for working with genomic and high throughput sequencing data.
☆374Oct 7, 2026Updated last week
Alternatives and similar repositories for fgbio
Users that are interested in fgbio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VarDict☆204Jan 5, 2024Updated 2 years ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆549Oct 4, 2026Updated last week
- VarDict Java port☆141Jan 5, 2024Updated 2 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆286May 21, 2025Updated last year
- Haplotype VCF comparison tools☆474Dec 7, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆338May 27, 2025Updated last year
- Microassembly based somatic variant caller for NGS data☆153Jun 23, 2022Updated 4 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Apr 20, 2026Updated 5 months ago
- The D4 Quantitative Data Format☆176Nov 28, 2025Updated 10 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆537Oct 5, 2026Updated last week
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆166Feb 12, 2026Updated 8 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆403Jun 16, 2026Updated 4 months ago
- verifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆111Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- tools for adding mutations to existing .bam files, used for testing mutation callers☆253Aug 5, 2026Updated 2 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆879May 2, 2026Updated 5 months ago
- FLT3 ITD detection (ITDseek) and simulation (ITDsim)☆14Feb 27, 2019Updated 7 years ago
- Per-base per-nucleotide depth analysis☆153May 9, 2026Updated 5 months ago
- The next version of bwa-mem☆865Oct 15, 2025Updated last year
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 5 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆346Feb 22, 2026Updated 7 months ago
- Spiritual successor to picard for sequencing qc☆63Updated this week
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆421May 25, 2026Updated 4 months ago
- Tools for working with SAM/BAM data☆613Dec 22, 2024Updated last year
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆341Sep 30, 2026Updated 2 weeks ago
- High-performance UMI tools for NGS data analysis☆57Updated this week
- ABRA2☆96Dec 2, 2022Updated 3 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆207Aug 23, 2026Updated last month
- Fast and accurate gene fusion detection from RNA-Seq data☆281Sep 21, 2025Updated last year
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,444Oct 7, 2026Updated last week
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Apr 25, 2023Updated 3 years ago
- Bayesian haplotype-based mutation calling☆327Feb 13, 2026Updated 8 months ago
- ☆57Mar 31, 2020Updated 6 years ago
- Barcoded Molecular Families☆22Nov 20, 2017Updated 8 years ago
- Copy number calling and variant classification using targeted short read sequencing☆151Oct 6, 2026Updated last week