Alternatives and similar repositories for rvtests:

Users that are interested in rvtests are comparing it to the libraries listed below

• freeseek / mocha
  MOsaic CHromosomal Alterations (MoChA) caller
  ☆84Updated last month
• mskcc / facets
  Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
  ☆150Updated last year
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆79Updated 2 years ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆104Updated 3 months ago
• freeseek / gtc2vcf
  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
  ☆146Updated last month
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆212Updated 9 months ago
• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆112Updated 8 months ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆45Updated 2 weeks ago
• bmvdgeijn / WASP
  WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery
  ☆103Updated 3 years ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆71Updated 2 weeks ago
• molgenis / systemsgenetics
  Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
  ☆172Updated 3 months ago
• ncbi / TPMCalculator
  TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
  ☆129Updated 9 months ago
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆47Updated last month
• parklab / NGSCheckMate
  Software program for checking sample matching for NGS data
  ☆129Updated 9 months ago
• freeseek / score
  Tools to work with GWAS-VCF summary statistics files
  ☆113Updated 5 months ago
• PMBio / peer
  A factor analysis package
  ☆99Updated 12 years ago
• weizhouUMICH / SAIGE
  ☆193Updated 2 years ago
• bvilhjal / ldpred
  ☆96Updated 2 years ago
• quinlan-lab / sllobs-biostats
  ☆70Updated 3 years ago
• UMCUGenetics / MutationalPatterns
  R package for extracting and visualizing mutational patterns in base substitution catalogues
  ☆106Updated 2 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆64Updated 2 years ago
• szpiech / selscan
  Haplotype based scans for selection
  ☆123Updated this week
• neurogenetics / GWAS-pipeline
  This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GW…
  ☆41Updated 2 years ago
• limix / limix
  Linear mixed model for genomic analyses.
  ☆104Updated 3 years ago
• VanLoo-lab / ascat
  ASCAT R package
  ☆176Updated this week
• lima1 / PureCN
  Copy number calling and variant classification using targeted short read sequencing
  ☆132Updated this week
• andreyshabalin / MatrixEQTL
  Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
  ☆74Updated last year
• brentp / bwa-meth
  fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
  ☆147Updated 7 months ago
• PGScatalog / pgsc_calc
  The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
  ☆127Updated last week
• stephenturner / qqman
  An R package for creating Q-Q and manhattan plots from GWAS results
  ☆167Updated last year