zhanxw / rvtestsLinks
Rare variant test software for next generation sequencing data
☆139Updated 3 years ago
Alternatives and similar repositories for rvtests
Users that are interested in rvtests are comparing it to the libraries listed below
Sorting:
- Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF☆154Updated 5 months ago
- MOsaic CHromosomal Alterations (MoChA) caller☆86Updated 5 months ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆149Updated 2 years ago
- A factor analysis package☆100Updated 13 years ago
- ☆178Updated 2 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆105Updated 4 years ago
- Copy number calling and variant classification using targeted short read sequencing☆136Updated 2 months ago
- Relevant papers for CNV and SV approaches☆94Updated 8 months ago
- Learning the Variant Call Format☆140Updated last year
- ☆98Updated 3 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆221Updated last year
- Microassembly based somatic variant caller for NGS data☆155Updated 3 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆138Updated this week
- Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool☆173Updated 7 months ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- Linear mixed model for genomic analyses.☆105Updated 4 years ago
- methods for functional summary-based imputation☆85Updated 3 years ago
- deconstructSigs☆142Updated 2 years ago
- Software program for checking sample matching for NGS data☆134Updated last year
- Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…☆81Updated 9 months ago
- An R package for creating Q-Q and manhattan plots from GWAS results☆169Updated last year
- Analysis pipeline for cancer sequencing data☆110Updated 2 months ago
- ☆193Updated 3 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆222Updated 2 months ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆49Updated 3 weeks ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆149Updated 10 months ago
- Tools to work with GWAS-VCF summary statistics files