zhanxw / rvtestsLinks
Rare variant test software for next generation sequencing data
☆140Updated 3 years ago
Alternatives and similar repositories for rvtests
Users that are interested in rvtests are comparing it to the libraries listed below
Sorting:
- ☆98Updated 3 years ago
- Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF☆156Updated 3 weeks ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆151Updated 2 years ago
- MOsaic CHromosomal Alterations (MoChA) caller☆87Updated 3 weeks ago
- Linear mixed model for genomic analyses.☆107Updated 4 years ago
- A factor analysis package☆101Updated 13 years ago
- Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool☆174Updated 9 months ago
- An R package for creating Q-Q and manhattan plots from GWAS results☆170Updated last year
- methods for functional summary-based imputation☆88Updated 3 years ago
- ☆194Updated 3 years ago
- Copy number calling and variant classification using targeted short read sequencing☆140Updated 3 weeks ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆51Updated this week
- ☆180Updated 2 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆223Updated 4 months ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- Relevant papers for CNV and SV approaches☆93Updated 10 months ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆106Updated 4 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆224Updated last year
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆142Updated 2 years ago
- deconstructSigs☆143Updated 2 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc☆112Updated 4 years ago
- The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation☆145Updated last month
- Learning the Variant Call Format☆144Updated last month
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆142Updated 2 months ago
- Sequence kernel association test (SKAT)☆52Updated last month
- Documentation archive for GATK tools and workflows☆88Updated 5 years ago
- Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…☆82Updated 11 months ago
- Copy number vaiation detection from SNP arrays☆96Updated last year