zhanxw / rvtests

Related projects: ⓘ

• freeseek / mocha
  MOsaic CHromosomal Alterations (MoChA) caller
  ☆79Updated last month
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆74Updated 2 years ago
• genome / sciclone
  An R package for inferring the subclonal architecture of tumors
  ☆115Updated 11 months ago
• UMCUGenetics / MutationalPatterns
  R package for extracting and visualizing mutational patterns in base substitution catalogues
  ☆104Updated last year
• molgenis / systemsgenetics
  Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
  ☆171Updated 3 months ago
• PMBio / peer
  A factor analysis package
  ☆90Updated 12 years ago
• mskcc / facets
  Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
  ☆137Updated last year
• limix / limix
  Linear mixed model for genomic analyses.
  ☆102Updated 3 years ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆202Updated 3 months ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆86Updated last month
• h3abionet / h3agwas
  GWAS Pipeline for H3Africa
  ☆104Updated this week
• dpryan79 / MethylDackel
  A (mostly) universal methylation extractor for BS-seq experiments.
  ☆160Updated 2 months ago
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆209Updated 11 months ago
• parklab / NGSCheckMate
  Software program for checking sample matching for NGS data
  ☆122Updated 3 months ago
• geocarvalho / sv-cnv-studies
  Relevant papers for CNV and SV approaches
  ☆94Updated 3 weeks ago
• hdng / clonevol
  Inferring and visualizing clonal evolution in multi-sample cancer sequencing
  ☆141Updated 4 years ago
• raerose01 / deconstructSigs
  deconstructSigs
  ☆138Updated last year
• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆99Updated last year
• freeseek / gtc2vcf
  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
  ☆138Updated 4 months ago
• PacificBiosciences / IsoSeq_SA3nUP
  ☆80Updated this week
• cancerit / cgpBattenberg
  Battenberg algorithm and associated implementation script
  ☆51Updated 3 years ago
• VanLoo-lab / ascat
  ASCAT R package
  ☆162Updated last month
• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆68Updated 2 years ago
• szpiech / selscan
  Haplotype based scans for selection
  ☆111Updated last month
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆132Updated 4 years ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆158Updated last month
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆44Updated last week
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆58Updated last month
• PGScatalog / pgsc_calc
  The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
  ☆107Updated this week
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆130Updated 5 months ago