Alternatives and similar repositories for cromwell

Users that are interested in cromwell are comparing it to the libraries listed below

• openwdl / wdl
  Specification for the Workflow Description Language (WDL).
  ☆817Updated last week
• hail-is / hail
  Cloud-native genomic dataframes and batch computing
  ☆1,017Updated this week
• broadinstitute / gatk
  Official code repository for GATK versions 4 and up
  ☆1,820Updated this week
• nextflow-io / awesome-nextflow
  A curated list of nextflow based pipelines
  ☆598Updated 3 weeks ago
• arvados / arvados
  An open source platform for managing and analyzing biomedical big data
  ☆404Updated this week
• broadinstitute / picard
  A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
  ☆1,020Updated last week
• BioContainers / containers
  Bioinformatics containers
  ☆731Updated 2 months ago
• projectglow / glow
  An open-source toolkit for large-scale genomic analysis
  ☆284Updated this week
• bcbio / bcbio-nextgen
  Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
  ☆1,008Updated 10 months ago
• nextflow-io / patterns
  A curated collection of Nextflow implementation patterns
  ☆363Updated last year
• samtools / htslib
  C library for high-throughput sequencing data formats
  ☆860Updated this week
• bigdatagenomics / adam
  ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 li…
  ☆1,028Updated this week
• samtools / hts-specs
  Specifications of SAM/BAM and related high-throughput sequencing file formats
  ☆682Updated this week
• common-workflow-language / cwltool
  Common Workflow Language reference implementation
  ☆352Updated last week
• MultiQC / MultiQC
  Aggregate results from bioinformatics analyses across many samples into a single report.
  ☆1,327Updated last week
• samtools / htsjdk
  A Java API for high-throughput sequencing data (HTS) formats.
  ☆285Updated last month
• igvteam / igv
  Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
  ☆686Updated this week
• broadgsa / gatk
  Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…
  ☆294Updated 6 years ago
• samtools / samtools
  Tools (written in C using htslib) for manipulating next-generation sequencing data
  ☆1,745Updated this week
• arq5x / bedtools2
  bedtools - the swiss army knife for genome arithmetic
  ☆985Updated 4 months ago
• common-workflow-language / common-workflow-language
  Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
  ☆1,470Updated 7 months ago
• pysam-developers / pysam
  Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…
  ☆836Updated last month
• nextflow-io / nextflow
  A DSL for data-driven computational pipelines
  ☆3,053Updated this week
• shenwei356 / seqkit
  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
  ☆1,439Updated this week
• fulcrumgenomics / fgbio
  Tools for working with genomic and high throughput sequencing data.
  ☆335Updated last week
• freebayes / freebayes
  Bayesian haplotype-based genetic polymorphism discovery and genotyping.
  ☆834Updated last month
• igvteam / igv.js
  Embeddable genomic visualization component based on the Integrative Genomics Viewer
  ☆680Updated this week
• samtools / bcftools
  This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…
  ☆781Updated 2 weeks ago
• Illumina / hap.py
  Haplotype VCF comparison tools
  ☆437Updated last year
• BenLangmead / bowtie2
  A fast and sensitive gapped read aligner
  ☆724Updated 7 months ago