Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
☆1,063Apr 7, 2026Updated last week
Alternatives and similar repositories for cromwell
Users that are interested in cromwell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Specification for the Workflow Description Language (WDL).☆852Apr 8, 2026Updated last week
- Workflow Description Language developer tools & local runner☆200Feb 8, 2026Updated 2 months ago
- Official code repository for GATK versions 4 and up☆1,937Updated this week
- CLI for interacting with Cromwell servers☆54Apr 2, 2024Updated 2 years ago
- A collection of reusable WDL tasks. Category:Other☆88Apr 8, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A DSL for data-driven computational pipelines☆3,351Updated this week
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,062Mar 24, 2026Updated 3 weeks ago
- Warp Analysis Research Pipelines☆225Updated this week
- Educational materials for learning WDL☆130Mar 2, 2024Updated 2 years ago
- A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).☆927Apr 11, 2026Updated last week
- Cromwell/WDL wrapper for Python☆58Feb 13, 2026Updated 2 months ago
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆23Nov 16, 2022Updated 3 years ago
- ☆18Jan 24, 2018Updated 8 years ago
- ☆93Feb 25, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,439Apr 9, 2026Updated last week
- Workflows for germline short variant discovery with GATK4☆140May 7, 2021Updated 4 years ago
- Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊☆1,480Jan 8, 2026Updated 3 months ago
- Common Workflow Language reference implementation☆369Updated this week
- Cloud-native genomic dataframes and batch computing☆1,054Updated this week
- WDL plugin for pytest☆48Aug 1, 2023Updated 2 years ago
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,730Mar 22, 2025Updated last year
- Rich IDE support for Workflow Description Language☆43Mar 28, 2025Updated last year
- The WES API is a standard way to run and manage portable workflows.☆91Feb 20, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- An app store for scientific workflows, tools, notebooks, and services☆132Apr 10, 2026Updated last week
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆545Updated this week
- Tools for working with genomic and high throughput sequencing data.☆363Apr 7, 2026Updated last week
- Strelka2 germline and somatic small variant caller☆393Dec 29, 2021Updated 4 years ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆865Feb 8, 2026Updated 2 months ago
- DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.☆3,673Mar 19, 2026Updated last month
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆335May 27, 2025Updated 10 months ago
- Client for the Cromwell workflow engine☆17Mar 7, 2024Updated 2 years ago
- C library for high-throughput sequencing data formats☆915Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,154Updated this week
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆844Apr 1, 2026Updated 2 weeks ago
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,877Apr 11, 2026Updated last week
- Configure workflow/pipeline tests using yaml files.☆69Aug 4, 2024Updated last year
- Convert CWL to WDL☆17Oct 17, 2016Updated 9 years ago
- An open source platform for managing and analyzing biomedical big data☆416Apr 10, 2026Updated last week
- Workflow Description Language compiler for the DNAnexus platform☆43Jun 29, 2023Updated 2 years ago