broadinstitute / cromwellLinks
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
☆1,043Updated this week
Alternatives and similar repositories for cromwell
Users that are interested in cromwell are comparing it to the libraries listed below
Sorting:
- Specification for the Workflow Description Language (WDL).☆839Updated last month
- Cloud-native genomic dataframes and batch computing☆1,042Updated last week
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,038Updated last month
- Official code repository for GATK versions 4 and up☆1,896Updated this week
- A curated list of nextflow based pipelines☆615Updated 6 months ago
- An open source platform for managing and analyzing biomedical big data☆414Updated this week
- A Java API for high-throughput sequencing data (HTS) formats.☆292Updated 2 weeks ago
- An open-source toolkit for large-scale genomic analysis☆293Updated last week
- Common Workflow Language reference implementation☆361Updated last week
- Bioinformatics containers☆763Updated last month
- ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 li…☆1,041Updated 5 months ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,023Updated last year
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆709Updated this week
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆298Updated 7 years ago
- Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊☆1,474Updated this week
- A DSL for data-driven computational pipelines☆3,245Updated last week
- A curated collection of Nextflow implementation patterns☆367Updated 2 years ago
- C library for high-throughput sequencing data formats☆899Updated last week
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆695Updated last month
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,400Updated this week
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆702Updated last week
- Tools for working with genomic and high throughput sequencing data.☆350Updated last week
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆872Updated this week
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,810Updated last week
- Tools for working with SAM/BAM data☆599Updated last year
- Java utilities for Bioinformatics☆513Updated 3 weeks ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆515Updated 2 weeks ago
- Workflow Description Language developer tools & local runner☆202Updated last month
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆858Updated 6 months ago
- bedtools - the swiss army knife for genome arithmetic☆1,017Updated 9 months ago