broadinstitute / cromwellLinks
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
☆1,039Updated this week
Alternatives and similar repositories for cromwell
Users that are interested in cromwell are comparing it to the libraries listed below
Sorting:
- Specification for the Workflow Description Language (WDL).☆828Updated 2 weeks ago
- Cloud-native genomic dataframes and batch computing☆1,029Updated this week
- Official code repository for GATK versions 4 and up☆1,857Updated this week
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,028Updated 2 months ago
- A curated list of nextflow based pipelines☆607Updated 3 months ago
- Bioinformatics containers☆750Updated 3 weeks ago
- C library for high-throughput sequencing data formats☆882Updated 2 weeks ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,016Updated last year
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆295Updated 7 years ago
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆699Updated this week
- An open source platform for managing and analyzing biomedical big data☆409Updated last week
- A curated collection of Nextflow implementation patterns☆365Updated last year
- A Java API for high-throughput sequencing data (HTS) formats.☆287Updated last week
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,787Updated 2 weeks ago
- tools for working with genome variation graphs☆1,242Updated this week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,365Updated 3 weeks ago
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆690Updated last month
- Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊☆1,468Updated 10 months ago
- ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 li…☆1,036Updated 2 months ago
- A DSL for data-driven computational pipelines☆3,164Updated this week
- An open-source toolkit for large-scale genomic analysis☆288Updated last week
- bedtools - the swiss army knife for genome arithmetic☆999Updated 6 months ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆506Updated this week
- Common Workflow Language reference implementation☆355Updated last week
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆688Updated last week
- Tools for working with genomic and high throughput sequencing data.☆345Updated this week
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆855Updated 2 weeks ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,469Updated this week
- Haplotype VCF comparison tools☆443Updated last year
- The next version of bwa-mem☆785Updated 3 months ago