broadinstitute / cromwellLinks
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
☆1,019Updated this week
Alternatives and similar repositories for cromwell
Users that are interested in cromwell are comparing it to the libraries listed below
Sorting:
- Specification for the Workflow Description Language (WDL).☆814Updated last month
- A curated collection of Nextflow implementation patterns☆359Updated last year
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,013Updated this week
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,005Updated 9 months ago
- C library for high-throughput sequencing data formats☆856Updated this week
- Official code repository for GATK versions 4 and up☆1,811Updated this week
- A DSL for data-driven computational pipelines☆2,946Updated this week
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆294Updated 6 years ago
- Bioinformatics containers☆723Updated 3 weeks ago
- Cloud-native genomic dataframes and batch computing☆1,005Updated this week
- An open source platform for managing and analyzing biomedical big data☆403Updated this week
- Tools for working with genomic and high throughput sequencing data.☆329Updated this week
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,731Updated last week
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆679Updated last week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,309Updated last week
- A curated list of nextflow based pipelines☆590Updated 2 years ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆830Updated this week
- Near-optimal RNA-Seq quantification☆686Updated last month
- Common Workflow Language reference implementation☆349Updated this week
- bedtools - the swiss army knife for genome arithmetic☆979Updated 2 months ago
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆677Updated 2 weeks ago
- A Java API for high-throughput sequencing data (HTS) formats.☆285Updated 3 weeks ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,411Updated last month
- Haplotype VCF comparison tools☆432Updated last year
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆807Updated last year
- A quality control analysis tool for high throughput sequencing data☆510Updated last year
- MACS -- Model-based Analysis of ChIP-Seq☆743Updated last month
- The next version of bwa-mem☆756Updated 10 months ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants