Alternatives and similar repositories for VariantSpark

Users that are interested in VariantSpark are comparing it to the libraries listed below

• bigdatagenomics / mango
  A scalable genome browser. Apache 2 licensed.
  ☆126Updated 3 years ago
• GenomicsDB / GenomicsDB
  High performance data storage for importing, querying and transforming variants.
  ☆99Updated 6 months ago
• TileDB-Inc / TileDB-VCF
  Efficient variant-call data storage and retrieval library using the TileDB storage library.
  ☆99Updated this week
• opencb / opencga
  An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …
  ☆175Updated this week
• opencb / cellbase
  High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a ne…
  ☆92Updated 2 weeks ago
• bigdatagenomics / cannoli
  Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
  ☆41Updated 9 months ago
• broadinstitute / genomics-in-the-cloud
  Source code and related materials for the O'Reilly book
  ☆97Updated 3 years ago
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆99Updated 7 years ago
• Intel-HLS / GenomicsDB
  GenomicsDB
  ☆110Updated 2 years ago
• HadoopGenomics / Hadoop-BAM
  Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework
  ☆72Updated 3 years ago
• konradjk / exac_browser
  Browser for ExAC consortium data
  ☆106Updated 3 years ago
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆71Updated last month
• PharmGKB / PharmCAT
  The Pharmacogenomic Clinical Annotation Tool
  ☆150Updated 3 weeks ago
• pgxcentre / genipe
  Genome-wide imputation pipeline
  ☆31Updated last year
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆50Updated 5 years ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆61Updated last week
• citiususc / SparkBWA
  SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…
  ☆69Updated 6 years ago
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆128Updated 5 years ago
• disq-bio / disq
  A library for manipulating bioinformatics sequencing formats in Apache Spark
  ☆32Updated 3 months ago
• lifebit-ai / GATK
  Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices
  ☆11Updated 5 years ago
• gatk-workflows / gatk4-jupyter-notebook-tutorials
  This repository contains Jupyter Notebooks containing GATK Best Practices Workflows
  ☆26Updated 5 years ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆42Updated 2 years ago
• LANL-Bioinformatics / EDGE
  EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
  ☆75Updated 2 months ago
• CCDG / Pipeline-Standardization
  ☆82Updated 7 years ago
• dnanexus / dx-toolkit
  DNAnexus platform client libraries
  ☆103Updated this week
• googlegenomics / gcp-variant-transforms
  GCP Variant Transforms
  ☆141Updated 5 months ago
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆139Updated this week
• isb-cgc / examples-Python
  Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.
  ☆54Updated 6 years ago
• vidboda / MobiDetails
  WebApp for DNA variants interpretation
  ☆14Updated last week
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆94Updated last week