miniwdl-ext / miniwdl-awsLinks
Extends miniwdl to run workflows on AWS Batch & EFS
☆22Updated last year
Alternatives and similar repositories for miniwdl-aws
Users that are interested in miniwdl-aws are comparing it to the libraries listed below
Sorting:
- WDL plugin for pytest☆48Updated 2 years ago
- A python tool for parsing pedigree files☆16Updated 8 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 7 years ago
- A server for maintaining high-throughput sequencing QC data☆13Updated 4 months ago
- ☆13Updated 8 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Linter rules for Nextflow DSL scripts☆33Updated last week
- Terraform template to create AWS resources to execute jobs using nextflow☆22Updated 2 years ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Updated 4 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated 4 months ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆18Updated last year
- Allele frequency filter app☆14Updated 3 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 8 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Interactive table from gemini output☆10Updated 6 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Updated 9 years ago
- Open Targets Genetics UI☆15Updated 10 months ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆14Updated 2 weeks ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 6 months ago
- BED QC tool (in the making)☆17Updated 3 years ago
- Class materials for the NIH HPC snakemake class☆15Updated last year
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- SQL support plugin for Nextflow☆32Updated 2 months ago
- NExt generation Analysis Toolbox☆14Updated 10 years ago
- Visualization and charting JS library for streaming genomic data☆19Updated last year
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- The snakemake interface, currently works like a notebook (under development)☆20Updated 3 years ago
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago