miniwdl-ext / miniwdl-aws

Related projects ⓘ

Alternatives and complementary repositories for miniwdl-aws

• chanzuckerberg / idseq-workflows
  Portable WDL workflows for IDseq production pipelines
  ☆31Updated 2 years ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆16Updated 3 weeks ago
• goeckslab / isoseq-browser
  ☆13Updated 7 years ago
• bioforensics / rsidx
  Library for indexing VCF files for random access searches by rsID
  ☆17Updated last year
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆28Updated 3 months ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆12Updated last month
• rioualen / gene-regulation
  This project has moved and will no longer be edited here. New link ->
  ☆11Updated 7 years ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated last year
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆18Updated 5 years ago
• quinlan-lab / bedqc
  BED QC tool (in the making)
  ☆15Updated 2 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆19Updated 2 years ago
• jamesware / alleleFrequencyApp
  Allele frequency filter app
  ☆14Updated 2 years ago
• bartongroup / AlmostSignificant
  A server for maintaining high-throughput sequencing QC data
  ☆13Updated last year
• dnanexus-archive / dx-cwl
  Import and run CWL workflows on DNAnexus (alpha)
  ☆13Updated 6 years ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆26Updated last week
• SexChrLab / XYalign
  ☆23Updated 5 years ago
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆16Updated last year
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆21Updated 3 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 5 years ago
• fikipollo / paintomics3
  Integrative visualization of multiple omic datasets onto KEGG pathways.
  ☆11Updated 3 years ago
• moonso / ped_parser
  A python tool for parsing pedigree files
  ☆16Updated 7 years ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆14Updated 7 months ago
• lamortenera / bamsignals
  R package to quickly obtain count vectors from indexed bam files
  ☆13Updated 3 years ago
• stjude-rust-labs / crankshaft
  A Rust-based, headless workflow execution engine supporting local, cloud, and HPC.
  ☆20Updated last month
• davemcg / SeeGEM
  Interactive table from gemini output
  ☆10Updated 5 years ago
• ChristopherWilks / snaptron
  fast webservices based query tool for large sets of genomic features
  ☆25Updated last year
• mikelove / asthma
  RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)
  ☆19Updated 6 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• nextflow-io / nf-prov
  ☆26Updated last week
• sigven / cacao
  Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
  ☆21Updated 3 years ago