Extends miniwdl to run workflows on AWS Batch & EFS
☆22Feb 5, 2024Updated 2 years ago
Alternatives and similar repositories for miniwdl-aws
Users that are interested in miniwdl-aws are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- WDL plugin for pytest☆49Aug 1, 2023Updated 3 years ago
- Automatic Input Documentation for WDL workflows☆12Sep 5, 2024Updated 2 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 8 years ago
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 10 months ago
- Python library & CLI to create, view and edit PFB files☆14Sep 22, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion☆10Oct 20, 2020Updated 5 years ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 7 months ago
- A python tool for parsing pedigree files☆16Aug 29, 2017Updated 9 years ago
- Workflow Description Language developer tools & local runner☆207Updated this week
- Free mtDNA Haplogroup Classification Service☆37Jun 9, 2026Updated 4 months ago
- A collection of reusable WDL tasks. Category:Other☆88Sep 29, 2026Updated 2 weeks ago
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 10 months ago
- A performant Kubernetes-based task executor for the Task Execution Service (TES) 1.1 specification.☆18Oct 7, 2026Updated last week
- ☆18Sep 28, 2026Updated 2 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Anno is a variant annotation tool☆24May 18, 2016Updated 10 years ago
- NEAT read simulation tools☆101Jun 22, 2022Updated 4 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year
- Genomics Workflows on AWS☆148Jul 31, 2023Updated 3 years ago
- Variant Graph Craft (VGC) is an interactive genomic variant visualization program.☆19May 17, 2024Updated 2 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 5 years ago
- 🐇 Typescript-first LLM framework with static type inference, testability, and composability.☆18Dec 1, 2024Updated last year
- miRTrace☆13Jun 14, 2023Updated 3 years ago
- small RNA analysis programs: standalone jar files (sRNAbench, sRNAde, etc), manuals and Docker image☆19Jan 16, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Portable WDL workflows for IDseq production pipelines☆32Jan 19, 2022Updated 4 years ago
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆33May 19, 2026Updated 4 months ago
- A method of assessing sequence complexity based on kmer frequencies☆33Apr 9, 2018Updated 8 years ago
- A {crew} launcher plugin for AWS Batch☆20Jan 5, 2026Updated 9 months ago
- Ultima scripts related to downstream processing of WGS, MRD, methylation analysis☆11Sep 24, 2026Updated 3 weeks ago
- Epigenomics Program pipeline to analyze SHARE-seq data.☆23Mar 30, 2025Updated last year
- mutation testing for R☆17Nov 11, 2024Updated last year
- A crate for working with the Task Execution Service (TES) specification.☆13Oct 1, 2026Updated 2 weeks ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆23Nov 16, 2022Updated 3 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 5 years ago
- Venus method files in the “.pkg” format for the Semi Automated Passaging, Seeding and Maintenance, of the Allen cell collection of hiPSC …☆11Dec 17, 2020Updated 5 years ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- This guidance creates a scalable environment in AWS to prepare genomic, clinical, mutation, expression and imaging data for large-scale a…☆25Jun 30, 2025Updated last year
- The advanced implementation for BioChatter, using Next.js☆18Jan 17, 2025Updated last year
- Workflow Execution Service Backend☆21Sep 28, 2026Updated 2 weeks ago