microsoft / CromwellOnAzure
Microsoft Genomics implementation of the Broad Institute's Cromwell workflow engine on Azure
☆137Updated this week
Alternatives and similar repositories for CromwellOnAzure
Users that are interested in CromwellOnAzure are comparing it to the libraries listed below
Sorting:
- Jupyter Notebooks on Azure for Genomics Data Analysis☆107Updated last week
- [DEPRECATED] - A GA4GH Task Execution Service (TES) compatible implementation for Azure Compute☆18Updated last year
- C# implementation of the GA4GH TES API; provides distributed batch task execution on Microsoft Azure☆35Updated this week
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆150Updated 2 years ago
- Workflows for germline short variant discovery with GATK4☆136Updated 4 years ago
- Extensible specification for representing and uniquely identifying biological sequence variation☆88Updated last month
- ☆107Updated last month
- Microsoft Azure HPC & Big Compute☆14Updated 5 years ago
- Source code and related materials for the O'Reilly book☆95Updated 2 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Updated 5 years ago
- Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`☆268Updated last month
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆268Updated last year
- The Terra Data Repository built by the Jade team.☆13Updated this week
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆203Updated 4 years ago
- GA4GH Variation Representation Python Implementation☆56Updated 2 weeks ago
- VarDict☆199Updated last year
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆196Updated last month
- ☆177Updated last year
- Open workflow definitions for genomic analysis from MGI at WUSM.☆104Updated 2 months ago
- A tool set for short variant discovery in genetic sequence data.☆196Updated 4 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated 2 weeks ago
- ☆82Updated 6 years ago
- A structural variation pipeline for short-read sequencing☆187Updated this week
- TransVar - multiway annotator for precision medicine☆125Updated 2 years ago
- GWAS Pipeline for H3Africa☆108Updated last week
- ☆62Updated 8 years ago
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 5 months ago
- A collection of reusable WDL tasks. Category:Other☆87Updated 2 weeks ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆363Updated 4 months ago
- Rich IDE support for Workflow Description Language☆42Updated last month