Alternatives and similar repositories for CromwellOnAzure

Users that are interested in CromwellOnAzure are comparing it to the libraries listed below

• microsoft / genomicsnotebook
  Jupyter Notebooks on Azure for Genomics Data Analysis
  ☆110Updated last month
• microsoft / tes-azure-legacy
  [DEPRECATED] - A GA4GH Task Execution Service (TES) compatible implementation for Azure Compute
  ☆18Updated last year
• microsoft / ga4gh-tes
  C# implementation of the GA4GH TES API; provides distributed batch task execution on Microsoft Azure
  ☆37Updated last month
• gatk-workflows / gatk4-germline-snps-indels
  Workflows for germline short variant discovery with GATK4
  ☆137Updated 4 years ago
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆88Updated 2 months ago
• gatk-workflows / gatk4-data-processing
  Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools
  ☆151Updated 2 years ago
• ga4gh / benchmarking-tools
  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
  ☆202Updated 4 years ago
• broadinstitute / seqr
  web-based analysis tool for rare disease genomics
  ☆188Updated this week
• nf-core / raredisease
  Call and score variants from WGS/WES of rare disease patients.
  ☆101Updated this week
• lynnlangit / gcp-for-bioinformatics
  GCP for Bioinformatics Researchers
  ☆265Updated 3 weeks ago
• atks / vt
  A tool set for short variant discovery in genetic sequence data.
  ☆197Updated 4 years ago
• genome / analysis-workflows
  Open workflow definitions for genomic analysis from MGI at WUSM.
  ☆105Updated last month
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆189Updated this week
• broadinstitute / gatk-docs
  Documentation archive for GATK tools and workflows
  ☆86Updated 5 years ago
• PapenfussLab / gridss
  GRIDSS: the Genomic Rearrangement IDentification Software Suite
  ☆269Updated last month
• nf-core / website
  Code and files for the main nf-core website.
  ☆76Updated this week
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆87Updated last week
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆151Updated 4 months ago
• SciLifeLab / Sarek
  Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
  ☆133Updated 5 years ago
• genome / bam-readcount
  Count bases in BAM/CRAM files
  ☆319Updated 3 years ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆57Updated this week
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆281Updated 8 months ago
• AstraZeneca-NGS / VarDictJava
  VarDict Java port
  ☆134Updated last year
• lgmgeo / AnnotSV
  Annotation and Ranking of Structural Variation
  ☆260Updated 3 months ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆152Updated 2 years ago
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆107Updated last month
• gatk-workflows / five-dollar-genome-analysis-pipeline
  Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
  ☆56Updated 5 years ago
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆77Updated 2 weeks ago
• GenomicsDB / GenomicsDB
  High performance data storage for importing, querying and transforming variants.
  ☆98Updated last month
• KHP-Informatics / ngseasy
  Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
  ☆87Updated 7 years ago