4dn-dcic / tibanna
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
☆69Updated 3 months ago
Alternatives and similar repositories for tibanna:
Users that are interested in tibanna are comparing it to the libraries listed below
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆42Updated last year
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆35Updated 3 weeks ago
- Documentation and description of AWS iGenomes S3 resource.☆111Updated 3 months ago
- CLI for interacting with Cromwell servers☆53Updated 11 months ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 4 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- A collection of reusable WDL tasks. Category:Other☆86Updated last week
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆22Updated 2 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- ☆82Updated 6 years ago
- ☆62Updated 8 years ago
- Cromwell/WDL wrapper for Python☆55Updated last year
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 5 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆40Updated 4 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated last month
- Extensible specification for representing and uniquely identifying biological sequence variation☆87Updated this week
- Open workflow definitions for genomic analysis from MGI at WUSM.☆103Updated last month
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆82Updated 5 months ago
- Reference genome resource manager☆75Updated last year
- GTEx Visualizations☆64Updated 3 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆82Updated last month
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆62Updated this week
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆55Updated 5 years ago
- FusionInspector code☆57Updated 4 months ago
- Portable WDL workflows for IDseq production pipelines☆31Updated 3 years ago