4dn-dcic / tibannaLinks
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
☆71Updated 3 weeks ago
Alternatives and similar repositories for tibanna
Users that are interested in tibanna are comparing it to the libraries listed below
Sorting:
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆38Updated last week
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Workflow Description Language compiler for the DNAnexus platform☆42Updated 2 years ago
- Documentation and description of AWS iGenomes S3 resource.☆117Updated 10 months ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- A collection of reusable WDL tasks. Category:Other☆88Updated 2 months ago
- Open workflow definitions for genomic analysis from MGI at WUSM.☆105Updated 4 months ago
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆78Updated 7 months ago
- CLI for interacting with Cromwell servers☆55Updated last year
- Reference genome resource manager☆74Updated last year
- List of tools and resources related to the 10x Genomics GEMCode/Chromium system☆85Updated 6 years ago
- Super small biological datasets for unit testing☆62Updated 6 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 8 years ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆41Updated last month
- Workflows for converting between sequence data formats☆39Updated 4 years ago
- ☆63Updated 9 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆125Updated 6 months ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆56Updated 5 years ago
- Example Nextflow pipelines and programming techniques☆106Updated last month
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆41Updated 5 years ago
- ☆69Updated 3 years ago