Alternatives and similar repositories for genetics-app

Users that are interested in genetics-app are comparing it to the libraries listed below

• hwanglab / divine
  Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data
  ☆13Updated 6 years ago
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 8 years ago
• freestatman / ideogRam
  R htmlwidget package for ideogram.js
  ☆16Updated 2 years ago
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• Shians / BiocExplorer
  ☆11Updated 6 years ago
• raulossio / VCF-plotein
  Visualisation and prioritisation of genomic variants from human exome sequencing projects
  ☆13Updated 6 years ago
• StatGenPRD / STOPGAP
  Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…
  ☆11Updated 5 years ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 6 years ago
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated last year
• sentisci / fheatmap
  R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…
  ☆11Updated 9 years ago
• statOmics / stageR
  stageR package
  ☆13Updated 2 years ago
• jamesware / alleleFrequencyApp
  Allele frequency filter app
  ☆14Updated 3 years ago
• DeveauP / QuantumClone
  Clonal reconstruction from HTS data
  ☆10Updated 3 years ago
• medvedevgroup / varmatch
  robust matching of small variant datasets using flexible scoring schemes
  ☆10Updated 5 years ago
• danro9685 / SparseSignatures
  Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…
  ☆11Updated last month
• hfang-bristol / XGR
  An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)
  ☆10Updated 2 years ago
• ernfrid / diagnose_dups
  A tool to examine duplicate read characteristics in a BAM file
  ☆12Updated 7 years ago
• PreMedKB / PAnno
  PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.
  ☆12Updated 2 years ago
• bioforensics / rsidx
  Library for indexing VCF files for random access searches by rsID
  ☆17Updated last year
• atgu / aou_gwas
  ☆11Updated last week
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆30Updated 8 months ago
• davemcg / SeeGEM
  Interactive table from gemini output
  ☆10Updated 6 years ago
• statgen / LDServer
  Fast API server for calculating linkage disequilibrium
  ☆19Updated last month
• roryk / bcbio.rnaseq
  Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …
  ☆24Updated 7 years ago
• dcjones / isolator
  Rapid and robust analysis of RNA-Seq experiments.
  ☆32Updated 9 years ago
• broadinstitute / wdl-runner
  Easily run WDL workflows on GCP
  ☆13Updated 3 years ago
• ChristophH / Inferelator
  The official Inferelator repository maintained by current or former Bonneau lab members
  ☆9Updated 7 years ago
• gabrielodom / pathwayPCA
  integrative pathway analysis with modern PCA methodology and gene selection
  ☆11Updated last year
• lkuchenb / imseq
  IMSEQ - IMmunogenetic SEQuence Analysis
  ☆15Updated 6 years ago
• cbare / vcf2maf
  Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)
  ☆14Updated 8 years ago