EliLillyCo / pytest-wdl
WDL plugin for pytest
☆48Updated last year
Alternatives and similar repositories for pytest-wdl:
Users that are interested in pytest-wdl are comparing it to the libraries listed below
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Curated collection of open-source bioinformatics tools☆28Updated 5 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆42Updated last year
- WDL tools for parsing, type-checking, and more☆25Updated 6 months ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 3 years ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated last month
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆22Updated 2 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated last month
- BigWig manpulation tools using libBigWig and htslib☆28Updated 5 months ago
- hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society …☆18Updated 2 years ago
- Portable WDL workflows for IDseq production pipelines☆31Updated 3 years ago
- Parse Illumina sample sheets with Python☆50Updated 10 months ago
- The snakemake interface, currently works like a notebook (under development)☆18Updated 3 years ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆62Updated this week
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 6 years ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 7 years ago
- Create WDL documentation using Markdown.☆27Updated this week
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- non-redundant, compressed, journalled, file-based storage for biological sequences☆40Updated 2 weeks ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆31Updated 10 months ago
- ☆30Updated 3 years ago
- GenoTypes Compressor☆15Updated 2 years ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆34Updated this week
- Library for indexing VCF files for random access searches by rsID☆17Updated last year