WDL plugin for pytest
☆48Aug 1, 2023Updated 2 years ago
Alternatives and similar repositories for pytest-wdl
Users that are interested in pytest-wdl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extends miniwdl to run workflows on AWS Batch & EFS☆22Feb 5, 2024Updated 2 years ago
- A collection of reusable WDL tasks. Category:Other☆88Mar 10, 2026Updated 2 weeks ago
- Workflow Description Language developer tools & local runner☆200Feb 8, 2026Updated last month
- Configure workflow/pipeline tests using yaml files.☆69Aug 4, 2024Updated last year
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Feb 14, 2021Updated 5 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated 3 weeks ago
- Rich IDE support for Workflow Description Language☆43Mar 28, 2025Updated 11 months ago
- Workflow Description Language compiler for the DNAnexus platform☆42Jun 29, 2023Updated 2 years ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Jan 7, 2022Updated 4 years ago
- CLI for interacting with Cromwell servers☆55Apr 2, 2024Updated last year
- Benchmarking variant calling in polyploids☆15Nov 26, 2021Updated 4 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Sep 13, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 7 years ago
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 3 months ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Sep 17, 2023Updated 2 years ago
- WDL tools for parsing, type-checking, and more☆28Sep 2, 2025Updated 6 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Flexible omics pipeline☆17Oct 16, 2025Updated 5 months ago
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 3 years ago
- Implicit Interval Tree with Interpolation Index☆42Jul 13, 2022Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 4 years ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Nov 3, 2021Updated 4 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- Vim syntax highlighting for WDL☆20Jul 28, 2021Updated 4 years ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆72Oct 16, 2025Updated 5 months ago
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆23Nov 16, 2022Updated 3 years ago
- Specification for the Workflow Description Language (WDL).☆847Mar 18, 2026Updated last week
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- AWS Quick Start Team☆24Oct 3, 2024Updated last year
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Mar 10, 2018Updated 8 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Apr 9, 2018Updated 7 years ago
- ☆29Feb 17, 2021Updated 5 years ago
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- A python tool for parsing pedigree files☆16Aug 29, 2017Updated 8 years ago