gorpipe / gorLinks
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
☆41Updated 2 weeks ago
Alternatives and similar repositories for gor
Users that are interested in gor are comparing it to the libraries listed below
Sorting:
- WDL tools for parsing, type-checking, and more☆27Updated 2 months ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 2 months ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Variant catalogue pipeline☆26Updated 6 months ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 6 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated 3 months ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 11 months ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated 2 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Genomic VCF to tab-separated values☆48Updated 2 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- Generic human DNA variant annotation pipeline☆59Updated last year
- Numerical Encoding for Human Genetic Variants☆42Updated 2 years ago
- Fast sequencing data quality metrics☆30Updated 2 months ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 5 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Intersect multiple VCF files with haplotype awareness☆25Updated 4 years ago
- Location of public benchmarking; primarily final results☆18Updated 9 months ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated 2 weeks ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago