gorpipe / gor
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
☆39Updated last month
Related projects: ⓘ
- Nextflow Tower CLI tool☆42Updated last week
- WDL tools for parsing, type-checking, and more☆23Updated last month
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics☆29Updated this week
- DEPRECIATED! Please use nf-core/tools instead☆19Updated 6 years ago
- Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalabilit…☆62Updated 5 months ago
- An opinionated Cromwell orchestration manager.☆40Updated last year
- Toil workflows for common genomic pipelines☆32Updated 4 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆38Updated 4 months ago
- WDL plugin for pytest☆48Updated last year
- Synteny Mapping and Analysis Program☆26Updated 2 weeks ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 3 years ago
- Free mtDNA Haplogroup Classification Service☆21Updated last month
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆31Updated 5 months ago
- Portable WDL workflows for IDseq production pipelines☆31Updated 2 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆56Updated last week
- RTG Core: Software for alignment and analysis of next-gen sequencing data.☆43Updated 7 months ago
- SEQSpark documentation☆18Updated 3 years ago
- Test data for MultiQC.☆19Updated this week
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- CPIC Data definitions and code to use that data☆26Updated last week
- Parse Illumina sample sheets with Python☆49Updated 6 months ago
- conda recipes for genomic data☆85Updated 3 years ago
- Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices☆12Updated 4 years ago
- Consensus assembly and variant calling workflow.☆12Updated 9 years ago
- viral-ngs: complete pipelines☆51Updated 2 weeks ago
- ☆34Updated last year
- ☆14Updated last year
- Monitor computational workflows in real time☆65Updated 3 months ago
- FRASER - Find RAre Splicing Events in RNA-seq☆36Updated 2 months ago