friend1ws / pmsignatureLinks
R package for extracting mutation signatures from a list of somatic mutations
☆37Updated 6 years ago
Alternatives and similar repositories for pmsignature
Users that are interested in pmsignature are comparing it to the libraries listed below
Sorting:
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Glimma R package☆50Updated 11 months ago
- Tools for visualizing genomics data☆69Updated 3 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Lollipop-diagram to interactively visualize genetic mutations☆32Updated 11 months ago
- Nozzle is a report generation toolkit for data analysis pipelines implemented in R.☆68Updated 9 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 weeks ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- Genomic plot in trellis layout☆41Updated last year
- ☆22Updated 8 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 7 months ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- Transcript quantification import with automatic metadata detection☆68Updated last month
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 10 months ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆44Updated 7 months ago
- [DEPRECATED] An R package for Google Genomics API queries.☆45Updated 2 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 months ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21Updated 2 months ago