friend1ws / pmsignature
R package for extracting mutation signatures from a list of somatic mutations
☆37Updated 5 years ago
Alternatives and similar repositories for pmsignature:
Users that are interested in pmsignature are comparing it to the libraries listed below
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 11 months ago
- ☆22Updated 8 years ago
- Tools for visualizing genomics data☆67Updated 3 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 weeks ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 7 months ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆43Updated 4 months ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Independent Hypothesis Weighting☆15Updated last year
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- ☆28Updated 9 months ago
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆22Updated 4 years ago
- Flexible Bayesian inference of mutational signatures☆34Updated 2 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- Genomic plot in trellis layout☆39Updated last year
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- Toolkit for QTL mapping and meta-analysis.☆16Updated 2 years ago
- Glimma R package☆50Updated 8 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Updated 11 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Updated 5 months ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago