Alternatives and similar repositories for d4-format

Users that are interested in d4-format are comparing it to the libraries listed below

• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆141Updated 2 months ago
• varlociraptor / varlociraptor
  Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
  ☆129Updated this week
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆107Updated last month
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆93Updated 2 months ago
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆102Updated 2 weeks ago
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆136Updated 9 months ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆120Updated last week
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆71Updated last year
• brentp / echtvar
  using all the bits for echt rapid variant annotation and filtering
  ☆152Updated 8 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆80Updated 8 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆93Updated 2 months ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆100Updated last year
• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• COMBINE-lab / terminus
  ☆57Updated 3 years ago
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆131Updated last month
• onecodex / needletail
  Fast FASTX parsing and k-mer methods in Rust
  ☆200Updated 4 months ago
• mlafave / sam2pairwise
  sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.
  ☆44Updated 10 years ago
• COMBINE-lab / pufferfish
  An efficient index for the colored, compacted, de Bruijn graph
  ☆110Updated last year
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆66Updated this week
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆92Updated 3 weeks ago
• nspies / genomeview
  An extensible python-based genomics visualization engine
  ☆145Updated 2 years ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆163Updated last week
• ekimb / rust-mdbg
  minimizer-space de Bruijn graphs (mdBG) for whole genome assembly
  ☆183Updated last year
• dohlee / metheor
  Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)
  ☆48Updated 3 months ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆68Updated 2 weeks ago
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆117Updated 2 weeks ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆52Updated last year
• brentp / vcfexpress
  expressions on VCFs
  ☆87Updated 7 months ago
• snakemake-workflows / dna-seq-varlociraptor
  A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …
  ☆86Updated this week
• mbhall88 / rasusa
  Randomly subsample sequencing reads or alignments
  ☆246Updated last week