Alternatives and similar repositories for d4-format

Users that are interested in d4-format are comparing it to the libraries listed below

• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆143Updated last month
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆111Updated 2 months ago
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆138Updated 11 months ago
• varlociraptor / varlociraptor
  Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
  ☆130Updated this week
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆95Updated last month
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆139Updated last month
• brentp / echtvar
  using all the bits for echt rapid variant annotation and filtering
  ☆152Updated 9 months ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆103Updated last month
• snakemake-workflows / dna-seq-varlociraptor
  A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …
  ☆88Updated this week
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆72Updated last year
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆93Updated 3 months ago
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆131Updated 3 months ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆100Updated this week
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆81Updated 10 months ago
• onecodex / needletail
  Fast FASTX parsing and k-mer methods in Rust
  ☆204Updated last month
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆164Updated last week
• mlafave / sam2pairwise
  sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.
  ☆44Updated 10 years ago
• brentp / vcfexpress
  expressions on VCFs
  ☆89Updated 9 months ago
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆99Updated last week
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆66Updated last month
• COMBINE-lab / terminus
  ☆57Updated 3 years ago
• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago
• ekimb / rust-mdbg
  minimizer-space de Bruijn graphs (mdBG) for whole genome assembly
  ☆183Updated last year
• fiberseq / fibertools-rs
  Tools for fiberseq data written in rust.
  ☆62Updated last week
• nspies / genomeview
  An extensible python-based genomics visualization engine
  ☆145Updated 2 years ago
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆95Updated last year
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆98Updated last week
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated last month