Intel-HLS / GenomicsDB
GenomicsDB
☆111Updated 2 years ago
Alternatives and similar repositories for GenomicsDB:
Users that are interested in GenomicsDB are comparing it to the libraries listed below
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆70Updated 2 years ago
- Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…☆143Updated 6 years ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆98Updated 7 years ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Updated 8 years ago
- High performance data storage for importing, querying and transforming variants.☆98Updated 3 weeks ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 5 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆33Updated 7 years ago
- MuTect -- Accurate and sensitive cancer mutation detection☆96Updated 2 years ago
- The Genome Modeling System installer☆78Updated 9 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- A scalable genome browser. Apache 2 licensed.☆125Updated 2 years ago
- A genotype query interface.☆135Updated 4 years ago
- ☆82Updated 6 years ago
- Browser for ExAC consortium data☆106Updated 3 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆59Updated last week
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆294Updated 6 years ago
- DNAnexus platform client libraries☆93Updated this week
- Tools for early stage alignment file processing☆93Updated 6 years ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆219Updated 6 months ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Server wrapper that turns command line tools into web services☆61Updated 6 years ago
- Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data☆290Updated last month
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- A tool set for short variant discovery in genetic sequence data.☆196Updated 3 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- Models and APIs for Genomic data. RETIRED 2018-01-24☆218Updated 2 years ago
- genetic variant expressions, annotation, and filtering for great good.☆259Updated last month
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆126Updated 2 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago