statgenetics / seqsparkLinks
SEQSpark documentation
☆18Updated 4 years ago
Alternatives and similar repositories for seqspark
Users that are interested in seqspark are comparing it to the libraries listed below
Sorting:
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 5 months ago
- Fast fusion detection using kallisto☆79Updated 4 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Allele frequency filter app☆14Updated 3 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 8 years ago
- Genomic VCF to tab-separated values☆47Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated last month
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Updated 9 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- hail-based pipelines for annotating variant callsets and exporting them to elasticsearch☆23Updated this week
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- ☆33Updated 3 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago