SEQSpark documentation
☆18Nov 17, 2020Updated 5 years ago
Alternatives and similar repositories for seqspark
Users that are interested in seqspark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Finding a scalable alternative to the VCF File for genomics analysis☆14Jan 5, 2017Updated 9 years ago
- Spark VCF data source implementation for Dataframes☆15Jul 15, 2022Updated 4 years ago
- Minimac3 is a low memory and computationally efficient implementation of the genotype imputation algorithms. Minimac3 is designed to hand…☆30Mar 28, 2022Updated 4 years ago
- A comprehensive platform for population-scale genomic analyses☆10Apr 20, 2026Updated 4 months ago
- Gene Exploration System for Variance☆22Dec 8, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Evoker is a graphical tool for plotting genotype intensity data in order to assess quality of genotype calls. It implements a compact, bi…☆13Dec 21, 2017Updated 8 years ago
- Encore Analysis Server☆13Updated this week
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Apr 26, 2017Updated 9 years ago
- software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis☆32Jan 24, 2022Updated 4 years ago
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11Jul 29, 2026Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Jul 27, 2026Updated last month
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆18Aug 30, 2024Updated 2 years ago
- Python client for GA4GH htsget protocol☆15Nov 7, 2022Updated 3 years ago
- gnomAD browser pre-ASHG 2018☆32Nov 2, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Yet another small programming language and VM.☆12Sep 6, 2020Updated 5 years ago
- Selecting features as (network) nodes☆11May 27, 2018Updated 8 years ago
- ☆13Jun 21, 2017Updated 9 years ago
- Differential Mutation Analysis☆11May 24, 2020Updated 6 years ago
- ☆14Oct 26, 2017Updated 8 years ago
- Browser for ExAC consortium data☆11Oct 23, 2017Updated 8 years ago
- CRUD API built with Laravel Lumen☆11Sep 11, 2017Updated 8 years ago
- Package to create MOVIE Plots☆12Oct 31, 2019Updated 6 years ago
- breakfast is a simple and fast tool for clustering SARS-CoV-2 genomes using precalculated sequence features (e.g. nucleotide substitution…☆11Aug 1, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- List of conferences with talk videos posted online☆12Sep 23, 2023Updated 2 years ago
- Interface to various variant calling formats.☆31Apr 10, 2026Updated 4 months ago
- GenomicsDB☆109Jan 3, 2023Updated 3 years ago
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆12Mar 21, 2025Updated last year
- Use somatic mutations to choose a personalized cancer vaccine (tumor-specific immunogenic peptides)☆16Sep 23, 2016Updated 9 years ago
- Experiments for iCEstick evaluation board with iCE40HX-1k FPGA - using open source toolchain☆13Nov 24, 2015Updated 10 years ago
- ☆37Feb 19, 2022Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆33Oct 23, 2023Updated 2 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Mar 17, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Generic Interactive Variant Analysis browser☆29Apr 12, 2022Updated 4 years ago
- A java library for simple progress monitoring on the console☆19Oct 13, 2020Updated 5 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆34Feb 26, 2019Updated 7 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Jan 21, 2026Updated 7 months ago
- Prepare Sailfish and Salmon output for downstream analysis☆41Jun 6, 2019Updated 7 years ago
- Workshop "From interactive to social media: how to promote data journalism" European Data and Computational Journalism Conference 2018☆12Jun 21, 2018Updated 8 years ago
- Utilities to create and analyze gVCF files☆38Mar 21, 2017Updated 9 years ago