Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
☆41Mar 17, 2026Updated last week
Alternatives and similar repositories for cannoli
Users that are interested in cannoli are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Mar 17, 2026Updated last week
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Apr 26, 2017Updated 8 years ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 5 years ago
- Spark VCF data source implementation for Dataframes☆15Jul 15, 2022Updated 3 years ago
- ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 li…☆1,046Mar 17, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated last month
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- A Reproducible Untargeted Metabolomics Data Processing Pipeline☆11Mar 18, 2021Updated 5 years ago
- ☆13Jun 21, 2017Updated 8 years ago
- Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows☆14Jun 27, 2018Updated 7 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Sep 5, 2019Updated 6 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆30Mar 19, 2026Updated last week
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- ☆35Feb 20, 2020Updated 6 years ago
- ☆30Oct 6, 2021Updated 4 years ago
- ☆19May 10, 2023Updated 2 years ago
- An open-source toolkit for large-scale genomic analysis☆298Mar 15, 2026Updated last week
- SEQSpark documentation☆18Nov 17, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs☆69May 27, 2022Updated 3 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 2 years ago
- A python package from Pacific Biosciences to analyze centromeric sequences☆21Oct 7, 2015Updated 10 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated 11 months ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆15Feb 25, 2017Updated 9 years ago
- ☆14Jan 20, 2016Updated 10 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆71Mar 11, 2019Updated 7 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Jul 22, 2015Updated 10 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 3 years ago
- Assembly Based ReAligner☆75May 24, 2018Updated 7 years ago