bigdatagenomics / cannoliLinks
Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
☆41Updated 6 months ago
Alternatives and similar repositories for cannoli
Users that are interested in cannoli are comparing it to the libraries listed below
Sorting:
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 2 weeks ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- Scalable RNA-seq analysis☆73Updated 4 years ago
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆71Updated 2 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆22Updated 4 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 5 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 2 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- ☆25Updated 4 years ago
- Library for manipulating genomic variants and predicting their effects☆85Updated last year
- Biological Graphic tool in Python☆34Updated 5 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 9 months ago
- conda recipes for genomic data☆84Updated 4 years ago
- GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular …☆41Updated last week
- Efficient handling of FASTQ files from Python☆51Updated last month
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Ensembl tools☆35Updated 4 months ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Updated 8 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 3 months ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 9 months ago
- Benchmarking toolkit for variant calling☆48Updated 4 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Fast spliced aligner with low memory requirements☆41Updated 10 years ago