Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
☆41Mar 17, 2026Updated 7 months ago
Alternatives and similar repositories for cannoli
Users that are interested in cannoli are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆36May 6, 2026Updated 5 months ago
- Genome-wide association studies identify genetic variations associated with a target disease or trait. Researchers and clinicians can use…☆11Apr 12, 2024Updated 2 years ago
- Distributed ambiguous fragment assignment using eXpress and Spark.☆13Jan 13, 2016Updated 10 years ago
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Apr 26, 2017Updated 9 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆70Sep 5, 2019Updated 7 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 6 years ago
- ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 li…☆1,060Mar 17, 2026Updated 7 months ago
- Spark VCF data source implementation for Dataframes☆15Jul 15, 2022Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Oct 23, 2026Updated last week
- ☆15Feb 25, 2017Updated 9 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆74Dec 2, 2022Updated 3 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- A Reproducible Untargeted Metabolomics Data Processing Pipeline☆11Mar 18, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Variant Caller, Distributed. Apache 2 licensed.☆72Mar 11, 2019Updated 7 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 7 years ago
- ☆11Sep 11, 2024Updated 2 years ago
- indel haplotype visualization on the command line from BAM files☆12Mar 12, 2014Updated 12 years ago
- ☆14Oct 9, 2022Updated 4 years ago
- ☆35Feb 20, 2020Updated 6 years ago
- ☆13Jun 21, 2017Updated 9 years ago
- An open-source toolkit for large-scale genomic analysis☆310Oct 22, 2026Updated last week
- Use somatic mutations to choose a personalized cancer vaccine (tumor-specific immunogenic peptides)☆16Sep 23, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tool for comparing mutation calls in VCF format☆12Sep 7, 2013Updated 13 years ago
- A support vector machine for calling variants from next-gen sequencing data☆15Dec 12, 2013Updated 12 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 7 years ago
- Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows☆14Jun 27, 2018Updated 8 years ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- Compressive Read-mapping Accelerator☆14Sep 7, 2016Updated 10 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 8 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- machine learning for genomic variants☆147Jun 23, 2026Updated 4 months ago
- Lightweight C++ library for reading FASTA and FASTQ files.☆12Feb 16, 2019Updated 7 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- SEQSpark documentation☆18Nov 17, 2020Updated 5 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆89Apr 1, 2019Updated 7 years ago
- Ultrafast VCF GenoType Compressor (GTC) with instant random access, shrinking the 4.3 TB HRC dataset (27k samples, 40M variants) down to …☆16Oct 5, 2026Updated 3 weeks ago