bigdatagenomics / cannoliLinks
Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
☆41Updated 4 months ago
Alternatives and similar repositories for cannoli
Users that are interested in cannoli are comparing it to the libraries listed below
Sorting:
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 4 months ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆70Updated 2 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated 2 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- WDL tools for parsing, type-checking, and more☆25Updated 3 months ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated last month
- Biological Graphic tool in Python☆34Updated 5 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- ☆38Updated 5 months ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 2 years ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Bioinformatics Open Source Sequence machine☆33Updated last year
- Finding a scalable alternative to the VCF File for genomics analysis☆14Updated 8 years ago
- WDL plugin for pytest☆48Updated last year
- Library for manipulating genomic variants and predicting their effects☆84Updated last year
- Examples for the Google Genomics Pipelines API.☆50Updated 7 years ago
- VAPr: A Python package for NoSQL variant data storage, annotation and prioritization☆36Updated 4 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- WebApp for DNA variants interpretation☆13Updated 3 weeks ago
- SevenBridges Python Api bindings☆46Updated 5 months ago
- Ensembl tools☆35Updated 2 months ago
- SEQSpark documentation☆18Updated 4 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago