bigdatagenomics / cannoliLinks
Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
☆41Updated 3 months ago
Alternatives and similar repositories for cannoli
Users that are interested in cannoli are comparing it to the libraries listed below
Sorting:
- ☆38Updated 3 months ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- ☆36Updated last month
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 3 months ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆35Updated 2 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- A collection of modules and sub-workflows for Nextflow☆26Updated this week
- An automated RNA-seq pipeline using Nextflow☆37Updated 8 months ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Bioinformatics Open Source Sequence machine☆33Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- Ensembl tools☆34Updated last month
- Malleable All-seeing Journal Of Research Artifacts☆36Updated 2 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices☆12Updated 5 years ago
- Test data for MultiQC.☆22Updated last week
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- Efficient handling of FASTQ files from Python☆51Updated last week
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆56Updated 5 years ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆69Updated 2 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago