HTGenomeAnalysisUnit / SCE-VCFLinks
Sample Contamination Estimate from VCF
☆20Updated last year
Alternatives and similar repositories for SCE-VCF
Users that are interested in SCE-VCF are comparing it to the libraries listed below
Sorting:
- Location of public benchmarking; primarily final results☆18Updated 11 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- Structural variant benchmark☆22Updated 11 months ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Structural variant (SV) analysis tools☆40Updated last year
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated 2 years ago
- ☆16Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Updated 2 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 9 months ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 weeks ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- ☆35Updated 4 years ago
- ☆33Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆35Updated 3 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 5 months ago
- ☆33Updated 3 years ago
- ☆20Updated 2 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 7 months ago
- ☆23Updated 8 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Detect novel (and reference) STR expansions from short-read data☆70Updated 2 months ago
- Benchmark structural variant calls against a reference set☆18Updated last week
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago