Sample Contamination Estimate from VCF
☆20Nov 6, 2024Updated last year
Alternatives and similar repositories for SCE-VCF
Users that are interested in SCE-VCF are comparing it to the libraries listed below
Sorting:
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Feb 25, 2026Updated 3 weeks ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 2, 2026Updated 2 weeks ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- horizontal pileup☆16Nov 11, 2022Updated 3 years ago
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆21Jan 4, 2026Updated 2 months ago
- python stuff I use☆20Feb 16, 2026Updated last month
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 2 weeks ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 3 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Updated this week
- WDL workflows for variant calling and assembly using ONT☆39Updated this week
- Structural variant benchmark☆22Mar 4, 2025Updated last year
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 5 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- Statistical inference of recent positive selection using IBD segments☆14Sep 23, 2025Updated 5 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Apr 9, 2021Updated 4 years ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 3 months ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF f…☆19Oct 27, 2021Updated 4 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- ☆11Dec 9, 2022Updated 3 years ago
- ☆15Apr 10, 2024Updated last year
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆18Feb 11, 2026Updated last month
- Genomic VCF to tab-separated values☆48Mar 9, 2023Updated 3 years ago
- Tool to find regions of homozygosity (ROHs) from sequencing data.☆35Jun 17, 2024Updated last year
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- Filters for false-positive mutation calls in NGS☆34Apr 12, 2019Updated 6 years ago
- Here we present a method to plot the outputs of RFMIX version 2☆31Aug 14, 2024Updated last year
- A new tool to infer sex from massively parallel sequencing data.☆17May 16, 2025Updated 10 months ago
- ☆13Jan 16, 2026Updated 2 months ago
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Aug 25, 2017Updated 8 years ago
- Pipeline in place at the UGI for DNA level analysis☆11Aug 29, 2016Updated 9 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated last year
- A variant caller for the GBA gene using WGS data☆23Jul 31, 2024Updated last year
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year