Efficient variant-call data storage and retrieval library using the TileDB storage library.
☆109Oct 19, 2026Updated last week
Alternatives and similar repositories for TileDB-VCF
Users that are interested in TileDB-VCF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- High performance data storage for importing, querying and transforming variants.☆99Oct 23, 2026Updated last week
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆33Updated this week
- Java JNI interface to the TileDB Arrays storage and query engine☆27May 20, 2026Updated 5 months ago
- MyTile is a MariaDB storage engine for accessing TileDB arrays☆29Oct 31, 2025Updated 11 months ago
- Spark interface to the TileDB storage manager [please see README]☆17Dec 23, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- TileDB Connector for TrinoDB☆29Mar 7, 2024Updated 2 years ago
- ☆15Jan 16, 2018Updated 8 years ago
- ☆10Oct 21, 2019Updated 7 years ago
- using all the bits for echt rapid variant annotation and filtering☆166Jul 22, 2026Updated 3 months ago
- Convert vcf in parquet☆32Jan 23, 2025Updated last year
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆85Jul 24, 2026Updated 3 months ago
- An open-source toolkit for large-scale genomic analysis☆310Oct 22, 2026Updated last week
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆198Mar 10, 2025Updated last year
- The D4 Quantitative Data Format☆176Nov 28, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆36May 6, 2026Updated 5 months ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Jun 25, 2019Updated 7 years ago
- Python interface to TileDB Cloud REST API☆15May 5, 2026Updated 5 months ago
- Spark VCF data source implementation for Dataframes☆15Jul 15, 2022Updated 4 years ago
- Genome-wide association studies identify genetic variations associated with a target disease or trait. Researchers and clinicians can use…☆11Apr 12, 2024Updated 2 years ago
- (WIP) best-practices workflow for rare disease☆64Jul 1, 2024Updated 2 years ago
- Lossless VCF compression☆22Mar 4, 2022Updated 4 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- an API for intersections of genomic data☆150Oct 4, 2026Updated 3 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆11Apr 25, 2024Updated 2 years ago
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated 7 months ago
- visualization tools for exon/junction coverage☆12Dec 30, 2019Updated 6 years ago
- A modular annotation tool for genomic variants☆164Updated this week
- A fast, memory-efficient variant effect predictor written in Rust: a from-scratch reimplementation of the Ensembl Variant Effect Predicto…☆47Updated this week
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 5 years ago
- Rust Bindings for TileDB [early wip]☆20Mar 18, 2026Updated 7 months ago
- Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.☆134Sep 8, 2026Updated last month
- Genomic VCF to tab-separated values☆49May 23, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Extensible specification for representing and uniquely identifying biological sequence variation☆100Oct 13, 2026Updated 2 weeks ago
- Clone of the Bioconductor repository for the TileDBArray package.☆11Apr 10, 2026Updated 6 months ago
- C# API for TileDB Embedded☆20Jul 28, 2026Updated 3 months ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆190Apr 12, 2024Updated 2 years ago
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- Code used to generate manuscript figures and results.☆14Jan 10, 2024Updated 2 years ago
- Package providing bioimaging functionality using TileDB. Source of the tiledb-bioimg Python package.☆19Dec 17, 2025Updated 10 months ago