TileDB-Inc / TileDB-VCF

Related projects ⓘ

Alternatives and complementary repositories for TileDB-VCF

• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆85Updated 3 weeks ago
• brentp / echtvar
  using all the bits for echt rapid variant annotation and filtering
  ☆141Updated 3 months ago
• GenomicsDB / GenomicsDB
  High performance data storage for importing, querying and transforming variants.
  ☆94Updated last week
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆150Updated 6 months ago
• dnanexus / wdlTools
  WDL tools for parsing, type-checking, and more
  ☆25Updated 3 months ago
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆62Updated 3 months ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆41Updated last year
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆62Updated this week
• lh3 / fermikit
  De novo assembly based variant calling pipeline for Illumina short reads
  ☆107Updated 3 years ago
• CCDG / Pipeline-Standardization
  ☆81Updated 5 years ago
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆29Updated last month
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 3 months ago
• gatk-workflows / five-dollar-genome-analysis-pipeline
  Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
  ☆57Updated 4 years ago
• broadinstitute / cromshell
  CLI for interacting with Cromwell servers
  ☆53Updated 7 months ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆69Updated last week
• Illumina / PlatinumGenomes
  The Platinum Genomes Truthset
  ☆84Updated 7 years ago
• zstephens / neat-genreads
  NEAT read simulation tools
  ☆95Updated 2 years ago
• DecodeGenetics / graphtyper
  Population-scale genotyping using pangenome graphs
  ☆170Updated 8 months ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆40Updated last year
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆93Updated last month
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆49Updated 4 years ago
• mozack / abra2
  ABRA2
  ☆90Updated last year
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆93Updated 6 months ago
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆77Updated 8 months ago
• stjudecloud / workflows
  Bioinformatics workflows developed for and used on the St. Jude Cloud project.
  ☆34Updated last week
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆73Updated 5 years ago
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆117Updated 3 months ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆51Updated this week
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆76Updated last week
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆68Updated 5 months ago