TileDB-Inc / TileDB-VCF
Efficient variant-call data storage and retrieval library using the TileDB storage library.
☆92Updated this week
Alternatives and similar repositories for TileDB-VCF:
Users that are interested in TileDB-VCF are comparing it to the libraries listed below
- Scalable gVCF merging and joint variant calling for population sequencing projects☆154Updated 10 months ago
- A collection of reusable WDL tasks. Category:Other☆85Updated this week
- A C library for handling bigWig files☆75Updated last month
- This repository contains information about latest release from Genome in a Bottle project☆73Updated 5 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆126Updated last year
- ABRA2☆92Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆104Updated 4 years ago
- High performance data storage for importing, querying and transforming variants.☆98Updated this week
- ☆82Updated 6 years ago
- Population-scale genotyping using pangenome graphs☆178Updated last month
- CLI for interacting with Cromwell servers☆53Updated 10 months ago
- Tools for processing and analyzing structural variants.☆150Updated 2 years ago
- The Platinum Genomes Truthset☆86Updated 7 years ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆63Updated 2 weeks ago
- GA4GH Variation Representation Python Implementation☆53Updated last week
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- Per-base per-nucleotide depth analysis☆125Updated last month
- Fast and accurate coordinate conversion between assemblies☆112Updated 4 months ago
- using all the bits for echt rapid variant annotation and filtering☆148Updated 3 months ago
- Cromwell/WDL wrapper for Python☆55Updated last year
- ☆104Updated last year
- Extensible specification for representing and uniquely identifying biological sequence variation☆86Updated this week
- Assembly Based ReAligner☆72Updated 6 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆198Updated 3 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Updated 6 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 5 years ago
- phasing and Allele Specific Expression from RNA-seq☆111Updated 7 months ago
- PGR-TK: Pangenome Research Tool Kit☆98Updated 9 months ago