Efficient variant-call data storage and retrieval library using the TileDB storage library.
☆104Feb 12, 2026Updated 2 weeks ago
Alternatives and similar repositories for TileDB-VCF
Users that are interested in TileDB-VCF are comparing it to the libraries listed below
Sorting:
- High performance data storage for importing, querying and transforming variants.☆99May 15, 2025Updated 9 months ago
- Java JNI interface to the TileDB Arrays storage and query engine☆26Jan 24, 2026Updated last month
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 2 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Jun 25, 2019Updated 6 years ago
- Open Targets Genetics UI☆15Jan 31, 2025Updated last year
- MyTile is a MariaDB storage engine for accessing TileDB arrays☆29Oct 31, 2025Updated 4 months ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Jul 9, 2021Updated 4 years ago
- Genomic VCF to tab-separated values☆48Mar 9, 2023Updated 2 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- An open-source toolkit for large-scale genomic analysis☆294Feb 15, 2026Updated 2 weeks ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- Lossless VCF compression☆21Mar 4, 2022Updated 3 years ago
- Spark VCF data source implementation for Dataframes☆15Jul 15, 2022Updated 3 years ago
- Python interface to TileDB Cloud REST API☆15Feb 6, 2026Updated 3 weeks ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- A modular annotation tool for genomic variants☆146Updated this week
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆25Updated this week
- Python library & CLI to create, view and edit PFB files☆12Feb 19, 2026Updated last week
- The D4 Quantitative Data Format☆169Nov 28, 2025Updated 3 months ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆24Aug 7, 2023Updated 2 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆176Apr 12, 2024Updated last year
- Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.☆122Updated this week
- ☆10Aug 28, 2025Updated 6 months ago
- DuckDB Extension for working with bioinformatic data.☆19Oct 18, 2023Updated 2 years ago
- visualization tools for exon/junction coverage☆11Dec 30, 2019Updated 6 years ago
- A program to detect denovo-variants using next-generation sequencing data.☆55Mar 30, 2020Updated 5 years ago
- AWS Quick Start Team☆24Oct 3, 2024Updated last year
- Extensible specification for representing and uniquely identifying biological sequence variation☆96Updated this week
- ☆24Updated this week
- C# API for TileDB Embedded☆20Feb 16, 2026Updated last week
- Package providing bioimaging functionality using TileDB. Source of the tiledb-bioimg Python package.☆18Dec 17, 2025Updated 2 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Feb 10, 2026Updated 2 weeks ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Dec 16, 2025Updated 2 months ago
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 7 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Updated this week
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Jun 13, 2025Updated 8 months ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago