TileDB-Inc / TileDB-VCFLinks
Efficient variant-call data storage and retrieval library using the TileDB storage library.
☆95Updated last month
Alternatives and similar repositories for TileDB-VCF
Users that are interested in TileDB-VCF are comparing it to the libraries listed below
Sorting:
- High performance data storage for importing, querying and transforming variants.☆98Updated 2 months ago
- A collection of reusable WDL tasks. Category:Other☆87Updated last week
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated last year
- CLI for interacting with Cromwell servers☆55Updated last year
- Transcript versions for HGVS libraries☆32Updated 3 weeks ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆163Updated last year
- Extensible specification for representing and uniquely identifying biological sequence variation☆90Updated 3 months ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆66Updated 3 months ago
- Per-base per-nucleotide depth analysis☆134Updated 2 weeks ago
- GA4GH Variation Representation Python Implementation☆57Updated last week
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- using all the bits for echt rapid variant annotation and filtering☆153Updated 3 months ago
- A C library for handling bigWig files☆79Updated 6 months ago
- Create WDL documentation using Markdown.☆27Updated 2 weeks ago
- WDL plugin for pytest☆48Updated last year
- non-redundant, compressed, journalled, file-based storage for biological sequences☆42Updated 3 months ago
- A modular annotation tool for genomic variants☆125Updated last month
- simple comparison of snakemake, nextflow and cromwell/wdl☆49Updated 4 years ago
- Monitor computational workflows in real time☆74Updated last year
- Testing building mulled containers for multi-requirement tools.☆76Updated this week
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- Reference genome resource manager☆76Updated last year
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆127Updated 2 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆56Updated 5 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆97Updated 7 months ago
- ☆9Updated 8 months ago
- Command line utility for manipulating Illumina-generated FASTQ files.☆87Updated 4 months ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated 2 years ago
- A read extraction and realignment tool for next generation sequencing data☆100Updated 2 years ago
- WDL tools for parsing, type-checking, and more☆25Updated 3 months ago