Alternatives and similar repositories for TileDB-VCF

Users that are interested in TileDB-VCF are comparing it to the libraries listed below

• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆87Updated last week
• mlin / spVCF
  Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently
  ☆58Updated last year
• GenomicsDB / GenomicsDB
  High performance data storage for importing, querying and transforming variants.
  ☆98Updated 2 months ago
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆33Updated last week
• broadinstitute / cromshell
  CLI for interacting with Cromwell servers
  ☆55Updated last year
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆164Updated last year
• RWilton / Arioc
  Arioc: GPU-accelerated DNA short-read alignment
  ☆70Updated 2 months ago
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆80Updated 6 months ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆43Updated last year
• brentp / echtvar
  using all the bits for echt rapid variant annotation and filtering
  ☆153Updated 4 months ago
• slowkow / pytabix
  Retrieve data in genomic intervals with a Python interface for tabix.
  ☆82Updated 7 years ago
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆137Updated last week
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆66Updated 4 months ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆74Updated last year
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆126Updated 2 weeks ago
• refgenie / refgenie
  Reference genome resource manager
  ☆75Updated last year
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆38Updated 3 years ago
• ssadedin / bazam
  A read extraction and realignment tool for next generation sequencing data
  ☆101Updated 2 years ago
• roryk / tiny-test-data
  Super small biological datasets for unit testing
  ☆61Updated 5 years ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆76Updated this week
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆50Updated 5 years ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆92Updated last week
• DaehwanKimLab / hisat
  Fast spliced aligner with low memory requirements
  ☆41Updated 9 years ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆58Updated last week
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆97Updated 7 months ago
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated 5 months ago
• seppinho / mutserve
  mtDNA Variant Caller
  ☆34Updated 7 months ago