Alternatives and similar repositories for gcp-variant-transforms

Users that are interested in gcp-variant-transforms are comparing it to the libraries listed below

• bigdatagenomics / mango
  A scalable genome browser. Apache 2 licensed.
  ☆126Updated 3 years ago
• aehrc / VariantSpark
  machine learning for genomic variants
  ☆147Updated last month
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆61Updated last week
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆99Updated 7 years ago
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆94Updated last week
• EBISPOT / goci
  GWAS Catalog Ontology and Curation Infrastructure
  ☆26Updated last week
• opencb / opencga
  An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …
  ☆176Updated last week
• ga4gh / data-repository-service-schemas
  A repository for the schemas used for the Data Repository Service.
  ☆63Updated last week
• Intel-HLS / GenomicsDB
  GenomicsDB
  ☆110Updated 3 years ago
• GenomicsDB / GenomicsDB
  High performance data storage for importing, querying and transforming variants.
  ☆99Updated 8 months ago
• googlegenomics / htsget
  Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage
  ☆24Updated 6 years ago
• lynnlangit / TeamTeri
  Bioinformatics on GCP, AWS or Azure
  ☆59Updated 4 months ago
• broadinstitute / seqr
  web-based analysis tool for rare disease genomics
  ☆198Updated this week
• iobio / minion
  Server wrapper that turns command line tools into web services
  ☆60Updated 7 years ago
• ncbi / ncbi-vdb
  ncbi-vdb
  ☆92Updated this week
• ga4gh / task-execution-schemas
  ☆93Updated last month
• verilylifesciences / genomewarp
  GenomeWarp translates genetic variants from one genome assembly version to another.
  ☆97Updated 2 years ago
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆71Updated 3 months ago
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆152Updated 11 months ago
• isb-cgc / examples-Python
  Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.
  ☆54Updated 6 years ago
• opencb / cellbase
  High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a ne…
  ☆92Updated last week
• chanzuckerberg / miniwdl
  Workflow Description Language developer tools & local runner
  ☆201Updated 2 months ago
• lynnlangit / gcp-for-bioinformatics
  GCP for Bioinformatics Researchers
  ☆286Updated 7 months ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆42Updated 2 years ago
• DataBiosphere / terra-ui
  Web user interface for the Terra platform
  ☆54Updated this week
• google / deepconsensus
  DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …
  ☆254Updated 10 months ago
• dockstore / dockstore
  An app store for scientific workflows, tools, notebooks, and services
  ☆130Updated last week
• ga4gh / tool-registry-service-schemas
  APIs for discovering genomics tools, their metadata and their containers
  ☆33Updated 3 weeks ago
• phenotips / phenotips
  The open-source version of PhenoTips is no longer maintained. PhenoTips makes it simple to record clinical findings observed in patients …
  ☆103Updated 3 years ago
• openwdl / learn-wdl
  Educational materials for learning WDL
  ☆131Updated last year