Alternatives and similar repositories for gcp-variant-transforms:

Users that are interested in gcp-variant-transforms are comparing it to the libraries listed below

• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆88Updated 3 weeks ago
• bigdatagenomics / mango
  A scalable genome browser. Apache 2 licensed.
  ☆125Updated 2 years ago
• broadinstitute / cromshell
  CLI for interacting with Cromwell servers
  ☆53Updated last year
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆55Updated last week
• konradjk / exac_browser
  Browser for ExAC consortium data
  ☆106Updated 3 years ago
• ga4gh / benchmarking-tools
  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
  ☆203Updated 4 years ago
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆98Updated 7 years ago
• GenomicsDB / GenomicsDB
  High performance data storage for importing, querying and transforming variants.
  ☆98Updated last month
• PapenfussLab / gridss
  GRIDSS: the Genomic Rearrangement IDentification Software Suite
  ☆268Updated last year
• Illumina / hap.py
  Haplotype VCF comparison tools
  ☆427Updated last year
• exomiser / Exomiser
  A Tool to Annotate and Prioritize Exome Variants
  ☆210Updated last week
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆120Updated this week
• verilylifesciences / genomewarp
  GenomeWarp translates genetic variants from one genome assembly version to another.
  ☆97Updated last year
• brentp / goleft
  goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
  ☆219Updated 6 months ago
• biocommons / hgvs
  Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
  ☆268Updated last week
• broadinstitute / seqr
  web-based analysis tool for rare disease genomics
  ☆187Updated this week
• lynnlangit / gcp-for-bioinformatics
  GCP for Bioinformatics Researchers
  ☆259Updated 5 months ago
• Intel-HLS / GenomicsDB
  GenomicsDB
  ☆111Updated 2 years ago
• genome / analysis-workflows
  Open workflow definitions for genomic analysis from MGI at WUSM.
  ☆104Updated 2 months ago
• openwdl / learn-wdl
  Educational materials for learning WDL
  ☆125Updated last year
• DataBiosphere / terra-ui
  Web user interface for the Terra platform
  ☆54Updated last week
• RealTimeGenomics / rtg-tools
  RTG Tools: Utilities for accurate VCF comparison and manipulation
  ☆315Updated 10 months ago
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆157Updated last year
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆124Updated 5 years ago
• google / deepsomatic
  DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …
  ☆167Updated 3 weeks ago
• biothings / myvariant.info
  MyVariant.info: A BioThings API for human variant annotations
  ☆93Updated last week
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• ga4gh / data-repository-service-schemas
  A repository for the schemas used for the Data Repository Service.
  ☆61Updated last month
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆99Updated 3 weeks ago
• AstraZeneca-NGS / VarDictJava
  VarDict Java port
  ☆134Updated last year