Warp Analysis Research Pipelines
☆229Aug 15, 2026Updated this week
Alternatives and similar repositories for warp
Users that are interested in warp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of reusable WDL tasks. Category:Other☆89Aug 6, 2026Updated last week
- Workflow Description Language developer tools & local runner☆206Updated this week
- Rich IDE support for Workflow Description Language☆42Mar 28, 2025Updated last year
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 8 months ago
- A structural variation pipeline for short-read sequencing☆205Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This repository contains all containers that WARP uses.☆15Updated this week
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆34May 19, 2026Updated 2 months ago
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆1,080Aug 4, 2026Updated 2 weeks ago
- Common data model proposal for biomedical research intended to facilitate and encourage data sharing and reuse☆20Oct 18, 2022Updated 3 years ago
- A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample☆26Jul 27, 2026Updated 3 weeks ago
- Cromwell/WDL wrapper for Python☆58Feb 13, 2026Updated 6 months ago
- A companion for the Cromwell Server☆22Jul 18, 2026Updated 3 weeks ago
- Workflows for converting between sequence data formats☆40Sep 5, 2021Updated 4 years ago
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆162Aug 10, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CLI for interacting with Cromwell servers☆54Apr 2, 2024Updated 2 years ago
- viral-ngs: complete pipelines☆76Aug 7, 2026Updated last week
- Structural variant toolkit for VCFs☆422May 22, 2026Updated 2 months ago
- web-based analysis tool for rare disease genomics☆216Updated this week
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- Official code repository for GATK versions 4 and up☆1,984Updated this week
- Specification for the Workflow Description Language (WDL).☆857Jul 22, 2026Updated 3 weeks ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆337May 27, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Workflows used for processing whole genome sequence data + germline variant calling. This Repository has been archived, please visit the …☆28Jan 4, 2021Updated 5 years ago
- Tools for working with genomic and high throughput sequencing data.☆371Updated this week
- DRAGEN open-source mapper☆189Sep 8, 2023Updated 2 years ago
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,073Jul 31, 2026Updated 2 weeks ago
- Workflows for germline short variant discovery with GATK4☆144May 7, 2021Updated 5 years ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆39Aug 10, 2026Updated last week
- ☆12Sep 27, 2023Updated 2 years ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 11 years ago
- Long read production pipelines☆151Aug 11, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆568Aug 11, 2026Updated last week
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 8 months ago
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated 5 months ago
- Web user interface for the Terra platform☆54Updated this week
- Annotation and Ranking of Structural Variation☆307Aug 11, 2026Updated last week
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆34Mar 10, 2023Updated 3 years ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆44Aug 6, 2026Updated last week