broadinstitute / warpLinks
WDL Analysis Research Pipelines
☆211Updated this week
Alternatives and similar repositories for warp
Users that are interested in warp are comparing it to the libraries listed below
Sorting:
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆252Updated 4 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆241Updated 2 months ago
- parallel fastq-dump wrapper☆295Updated 2 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆275Updated 11 months ago
- A structural variation pipeline for short-read sequencing☆188Updated this week
- Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF☆150Updated 4 months ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆167Updated this week
- This Snakemake pipeline implements the GATK best-practices workflow☆253Updated last year
- ASCAT R package☆181Updated 2 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆201Updated 3 weeks ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆226Updated this week
- Annotation and Ranking of Structural Variation☆258Updated 2 months ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆201Updated 4 years ago
- RNA-seq analysis pipeline for detection of gene-fusions☆159Updated last week
- Quick mining and visualization of NGS data by integrating genomic databases☆265Updated 2 years ago
- Workflows for germline short variant discovery with GATK4☆137Updated 4 years ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆146Updated this week
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆268Updated 2 weeks ago
- ☆277Updated 3 months ago
- RNA-seq workflow using STAR and DESeq2☆341Updated 10 months ago
- Count bases in BAM/CRAM files☆317Updated 3 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆214Updated last month
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆216Updated last year
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆249Updated 6 months ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆196Updated last month
- Precision HLA typing from next-generation sequencing data☆199Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆109Updated 2 years ago
- Various algorithms for analysing genomics data☆229Updated this week
- A collection of scripts and notes related to genomics and bioinformatics☆211Updated last month
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆224Updated 3 weeks ago