fulcrumgenomics / fgsvLinks
Tools to gather evidence for structural variation via breakpoint detection.
☆19Updated 3 weeks ago
Alternatives and similar repositories for fgsv
Users that are interested in fgsv are comparing it to the libraries listed below
Sorting:
- Location of public benchmarking; primarily final results☆18Updated 10 months ago
- Sample Contamination Estimate from VCF☆20Updated last year
- ☆16Updated 11 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 5 months ago
- Unfazed by genomic variant phasing☆27Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 6 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Benchmark structural variant calls against a reference set☆18Updated this week
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 2 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 3 months ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- ☆23Updated last month
- Split a BAM file by haplotype support☆16Updated 8 years ago
- Automated Detection and Qualification of Differential Methylation☆16Updated 2 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- ☆20Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated last week
- Structural variant (SV) analysis tools☆39Updated last year
- Tools for merging Tandem Repeat VCF files☆37Updated 8 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 6 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 7 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Updated 4 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- ☆12Updated 4 years ago