ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
☆1,048Mar 17, 2026Updated last month
Alternatives and similar repositories for adam
Users that are interested in adam are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A scalable genome browser. Apache 2 licensed.☆127Dec 2, 2022Updated 3 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆71Mar 11, 2019Updated 7 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Mar 17, 2026Updated last month
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆41Feb 13, 2026Updated 2 months ago
- Cloud-native genomic dataframes and batch computing☆1,056Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly☆85Mar 22, 2026Updated last month
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Sep 5, 2019Updated 6 years ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆73Dec 2, 2022Updated 3 years ago
- Interactive in-browser track viewer☆280Oct 26, 2021Updated 4 years ago
- ☆15Feb 25, 2017Updated 9 years ago
- An open-source toolkit for large-scale genomic analysis☆300Updated this week
- An RNA pipeline built on top of ADAM. Apache 2 licensed.☆19Jan 19, 2018Updated 8 years ago
- Bioinformatics for the Scala programming language☆115Aug 24, 2025Updated 8 months ago
- machine learning for genomic variants☆147Apr 29, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- GenomicsDB☆109Jan 3, 2023Updated 3 years ago
- An example of bioinformatics and bigdata tools can playing nicely together☆14May 17, 2016Updated 9 years ago
- Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data☆299Sep 6, 2025Updated 8 months ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,029Aug 24, 2024Updated last year
- Official code repository for GATK versions 4 and up☆1,942Updated this week
- Population Stratification Analysis on Genomics Data Using Deep Learning☆25Sep 5, 2016Updated 9 years ago
- Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…☆147Aug 22, 2018Updated 7 years ago
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.☆3,691Mar 19, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆299Aug 22, 2018Updated 7 years ago
- a lightweight db framework for exploring genetic variation.☆327Apr 28, 2020Updated 6 years ago
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆719Mar 20, 2026Updated last month
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆33Mar 26, 2026Updated last month
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,731Mar 22, 2025Updated last year
- C library for high-throughput sequencing data formats☆918Apr 20, 2026Updated 2 weeks ago
- A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).☆929Updated this week
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆1,065Apr 29, 2026Updated last week
- [Historical] Reproducible Analyses for Bioinformatics☆106Mar 11, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A DSL for data-driven computational pipelines☆3,365Apr 29, 2026Updated last week
- cython + htslib == fast VCF and BCF processing☆440Feb 23, 2026Updated 2 months ago
- ☆93Feb 25, 2026Updated 2 months ago
- ☆15Jan 16, 2018Updated 8 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆401Aug 30, 2025Updated 8 months ago
- A Java API for high-throughput sequencing data (HTS) formats.☆298Updated this week
- Models and APIs for Genomic data. RETIRED 2018-01-24☆221Oct 28, 2022Updated 3 years ago