Quality control methods for human genomic variants.
☆60Sep 1, 2022Updated 4 years ago
Alternatives and similar repositories for variant-qc
Users that are interested in variant-qc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Documentation for the Google Genomics cookbook.☆142May 20, 2020Updated 6 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 months ago
- Queries to perform qc and analysis on genomes in BigQuery☆22Aug 2, 2017Updated 9 years ago
- R code implementing QTL mapping of physiological, behavioral and gene expression phenotypes in Carworth Farms White (CFW) outbred mice.☆10Aug 24, 2017Updated 9 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆20Nov 30, 2023Updated 2 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 5 years ago
- As part of the COVID-19 Host Genetics Global initative, this repo serves to corroborate sample scripts for sequencing QC.☆12Jul 30, 2020Updated 6 years ago
- Make interactive LocusZoom plots from a local GWAS file☆10May 9, 2025Updated last year
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆22Aug 7, 2023Updated 3 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Spark VCF data source implementation for Dataframes☆15Jul 15, 2022Updated 4 years ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 5 years ago
- A GWAS course☆12Nov 4, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Simple interval class for fast fasta access☆10Jun 18, 2012Updated 14 years ago
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 7 months ago
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 9 years ago
- ☆21Dec 26, 2025Updated 10 months ago
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 11 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 4 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated 7 months ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆18Mar 10, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GCP Variant Transforms☆147May 21, 2026Updated 5 months ago
- A method to locate variation clusters☆11Nov 27, 2025Updated 11 months ago
- Python for Command Line Oneliners☆19Jan 5, 2015Updated 11 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆14Apr 14, 2026Updated 6 months ago
- use the noise☆14Apr 15, 2020Updated 6 years ago
- ☆16Jan 15, 2025Updated last year
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- A comprehensive and intelligent clinical phasing tool☆15Dec 3, 2022Updated 3 years ago
- ☆14Oct 19, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code used to generate manuscript figures and results.☆14Jan 10, 2024Updated 2 years ago
- MaRe leverages the power of Docker and Spark to run and scale your serial tools in MapReduce fashion.☆14Apr 12, 2022Updated 4 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 5 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆19Jun 3, 2024Updated 2 years ago
- PGxPOP☆18Jan 25, 2023Updated 3 years ago
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆125Sep 10, 2018Updated 8 years ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago