Alternatives and similar repositories for variant-qc

Users that are interested in variant-qc are comparing it to the libraries listed below

• nfergu / popstrat
  Population Stratification Analysis on Genomics Data Using Deep Learning
  ☆26Updated 8 years ago
• epiviz / epiviz
  EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…
  ☆69Updated 2 years ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆97Updated 2 years ago
• cjlee112 / pygr
  Python graph database framework for bioinformatics
  ☆93Updated 3 years ago
• googlegenomics / readthedocs
  Documentation for the Google Genomics cookbook.
  ☆142Updated 5 years ago
• bigdatagenomics / mango
  A scalable genome browser. Apache 2 licensed.
  ☆125Updated 2 years ago
• datacarpentry / R-genomics
  Lesson on data analysis and visualization in R for genomics
  ☆43Updated 6 years ago
• nellore / rail
  Scalable RNA-seq analysis
  ☆73Updated 4 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• gmcvicker / genome
  Python library and scripts for retrieval and storage of genomics data in HDF5 format
  ☆26Updated 6 years ago
• bcbio / bcbio-nextgen-vm
  Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
  ☆65Updated 5 years ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆40Updated last year
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆84Updated 11 months ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• Bioconductor / GoogleGenomics
  [DEPRECATED] An R package for Google Genomics API queries.
  ☆45Updated 2 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated last week
• boutroslab / cld
  A software for the multispecies design of CRISPR/Cas9 libraries
  ☆35Updated 2 years ago
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆47Updated 4 years ago
• bcgsc / orca
  Genomics Research Container Architecture
  ☆48Updated 5 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• NCBI-Hackathons / SPeW
  Automatic Packaging and Distribution of Bioinformatics Pipelines
  ☆26Updated 7 years ago
• isb-cgc / examples-Python
  Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.
  ☆54Updated 5 years ago
• BauerLab / ngsane
  Analysis Framework for Biological Data from High Throughput Experiments
  ☆34Updated 8 years ago
• raphael-group / gd3
  Javascript library for visualizing genomics data with D3.
  ☆19Updated 8 years ago
• percyfal / snakemakelib
  Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
  ☆22Updated 9 years ago
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆98Updated 7 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• metalhelix / pipette
  variant discovery and annotation using GATK and Ensembl
  ☆17Updated 11 years ago
• bigdatagenomics / cannoli
  Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
  ☆41Updated 3 months ago
• googlegenomics / datalab-examples
  Example Cloud Datalab iPython Notebooks for genomics use cases.
  ☆25Updated 7 years ago