allenday / spark-genome-alignment-demoLinks
An example of bioinformatics and bigdata tools can playing nicely together
☆14Updated 9 years ago
Alternatives and similar repositories for spark-genome-alignment-demo
Users that are interested in spark-genome-alignment-demo are comparing it to the libraries listed below
Sorting:
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 6 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆41Updated 10 months ago
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Updated 8 years ago
- Population Stratification Analysis on Genomics Data Using Deep Learning☆25Updated 9 years ago
- Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly☆85Updated 7 years ago
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Updated 8 years ago
- A scalable genome browser. Apache 2 licensed.☆126Updated 3 years ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Updated 10 years ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆72Updated 3 years ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Updated 7 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14Updated 9 years ago
- Parallel Genomic Analysis Toolkit☆14Updated 6 years ago
- Quality control methods for human genomic variants.☆62Updated 3 years ago
- Load genomic BAM files using Apache Spark☆21Updated 7 years ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Updated 8 years ago
- Bioinformatics for the Scala programming language☆114Updated 4 months ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 6 years ago
- New url: https://github.com/biointec/halvade☆19Updated 8 years ago
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Updated 5 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 9 years ago
- machine learning for genomic variants☆147Updated 3 weeks ago
- BigDataScript: Scirpting language for big data☆92Updated 4 years ago
- A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs☆69Updated 3 years ago
- Benchmarking toolkit for variant calling☆48Updated 5 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Updated 9 months ago
- Streaming fragment assignment and quantification for high-throughput sequencing.☆37Updated 6 years ago
- GenomicsDB☆110Updated 2 years ago
- Bio4j abstract model and general entry point to the project☆120Updated 9 years ago
- Introduction to predictive modeling in Spark with applications in pharmaceutical bioinformatics☆39Updated 9 years ago
- Documentation for the Google Genomics cookbook.☆141Updated 5 years ago