Port of symphony algorithm of single-cell reference atlas mapping to Python
☆34May 19, 2026Updated last month
Alternatives and similar repositories for symphonypy
Users that are interested in symphonypy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for the clone2vec python package☆23May 6, 2026Updated last month
- Common Workflow Language definition files for workflows introduced in DAT2☆11May 23, 2022Updated 4 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆70May 7, 2026Updated last month
- Efficient and precise single-cell reference atlas mapping with Symphony☆123May 24, 2026Updated last month
- ☆16May 25, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14May 13, 2026Updated last month
- ☆67May 17, 2026Updated last month
- ☆67Sep 13, 2024Updated last year
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆274Apr 26, 2026Updated 2 months ago
- Single-cell epigenomics analysis tools☆321Updated this week
- .h5mu files interface for Seurat☆34Nov 28, 2023Updated 2 years ago
- Python implementation of the Slingshot pseudotime algorithm☆76Oct 28, 2025Updated 8 months ago
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Aug 3, 2023Updated 2 years ago
- Geometry-preserving random sampling☆98Oct 29, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Automatically annotate cell types, consistently across samples.☆24Jun 22, 2026Updated last week
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆12Apr 28, 2023Updated 3 years ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Jul 12, 2023Updated 2 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆23Jun 22, 2026Updated last week
- Multi-omic velocity inference☆119Oct 23, 2024Updated last year
- Python package to perform enrichment analysis from omics data.☆272Jun 22, 2026Updated last week
- Interactive visualization of spatial omics data☆86May 15, 2026Updated last month
- Fast algorithms for GLM-PCA.☆16Mar 12, 2025Updated last year
- ☆15Sep 12, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆57Jun 2, 2026Updated 3 weeks ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Jan 12, 2024Updated 2 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆18Jan 10, 2024Updated 2 years ago
- ☆11Mar 16, 2022Updated 4 years ago
- Pairwise Hierarchical Model☆20Mar 11, 2022Updated 4 years ago
- LIANA+: an all-in-one framework for cell-cell communication☆299Jun 17, 2026Updated last week
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆85Jun 5, 2026Updated 3 weeks ago
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆754Jun 22, 2026Updated last week
- A python port of the R package SCTransform:☆21Jul 10, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆24Jul 6, 2023Updated 2 years ago
- Annotated multivariate observation data in R☆53Apr 1, 2026Updated 2 months ago
- Single Cell Consensus Clustering with Speed☆24Dec 12, 2022Updated 3 years ago
- ☆45Jan 9, 2021Updated 5 years ago
- ☆22Jun 12, 2026Updated 2 weeks ago
- ☆13May 30, 2023Updated 3 years ago
- Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling☆13Nov 10, 2023Updated 2 years ago