Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-cell datasets.
☆57May 11, 2026Updated last week
Alternatives and similar repositories for cna
Users that are interested in cna are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Aug 24, 2023Updated 2 years ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Jan 12, 2024Updated 2 years ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Feb 8, 2023Updated 3 years ago
- Pairwise Hierarchical Model☆20Mar 11, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Reference mapping for single-cell genomics☆404Mar 21, 2026Updated 2 months ago
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- A guide to using the Python scRNA-seq analysis package Scanpy from R☆15Apr 27, 2020Updated 6 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 5 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆432May 11, 2026Updated last week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆394May 6, 2026Updated 2 weeks ago
- A Bayesian model for compositional single-cell data analysis☆196Jan 13, 2026Updated 4 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆33Feb 28, 2022Updated 4 years ago
- Cell type prioritization in single-cell data☆141Mar 26, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Methods for detecting doublets in single-cell sequencing data☆251Updated this week
- ☆11May 30, 2023Updated 2 years ago
- Quantifying experimental perturbations at single cell resolution☆114Sep 27, 2024Updated last year
- AUCell: score single cells with gene regulatory networks☆191Mar 9, 2024Updated 2 years ago
- ☆17May 11, 2026Updated last week
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆18May 14, 2026Updated last week
- ☆42Sep 14, 2022Updated 3 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆225Apr 26, 2026Updated 3 weeks ago
- Benchmarking analysis of data integration tools☆415Apr 27, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated 10 months ago
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 3 months ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 6 months ago
- Automated cell type classification☆116Jan 3, 2025Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆31May 4, 2026Updated 2 weeks ago
- ☆56Nov 28, 2025Updated 5 months ago
- Single-Cell Clustering Assessment Framework☆110Oct 27, 2023Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆80Aug 17, 2024Updated last year
- R package to visualize gene expression data based on weighted kernel density estimation☆114Feb 6, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Differential expression analysis for single-cell RNA-seq data.☆206Oct 21, 2025Updated 7 months ago
- Scalable Ultra-Sparse Bayesian PCA☆33Feb 13, 2024Updated 2 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆88Apr 14, 2026Updated last month
- ☆150Mar 20, 2026Updated 2 months ago
- ☆64Aug 26, 2025Updated 8 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Apr 14, 2026Updated last month
- ☆36Dec 19, 2023Updated 2 years ago