hemberg-lab / sc3sLinks
Single Cell Consensus Clustering with Speed
☆20Updated 3 years ago
Alternatives and similar repositories for sc3s
Users that are interested in sc3s are comparing it to the libraries listed below
Sorting:
- scRNAseq integration with triplet neural networks☆41Updated 3 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- ☆19Updated 4 years ago
- cTPnet Package☆27Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- RNA velocity validation☆22Updated 3 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆19Updated last week
- ☆26Updated 7 months ago
- Code and example of the D-SPIN framework☆24Updated 3 weeks ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Information-based dimensionality reduction☆29Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆39Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 3 months ago
- benchmark for single-cell RNA-seq imputation methods☆29Updated last year
- ACTIONet single-cell analysis framework☆44Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆27Updated 11 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Molecular interactions inference from single-cell multi-omics data☆30Updated 2 months ago
- Marker Selection by matching manifolds and elastic net☆23Updated last year
- CiteFuse:☆28Updated 2 years ago
- ☆14Updated 5 years ago
- Summary statistics for repertoires☆17Updated 2 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 9 months ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Updated 2 months ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Updated 8 months ago