hemberg-lab / sc3s
Single Cell Consensus Clustering with Speed
☆21Updated 2 years ago
Alternatives and similar repositories for sc3s:
Users that are interested in sc3s are comparing it to the libraries listed below
- Information-based dimensionality reduction☆29Updated 3 months ago
- ACTIONet single-cell analysis framework☆38Updated 6 months ago
- RNA velocity validation☆23Updated 3 years ago
- benchmark for single-cell RNA-seq imputation methods☆25Updated last year
- ☆23Updated 2 months ago
- ☆10Updated last year
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- cTPnet Package☆24Updated 2 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 3 years ago
- PROGENY Python implementation☆12Updated 2 years ago
- Molecular interactions inference from single-cell multi-omics data☆22Updated 4 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- High-definition modeling of chromatin + transcriptomics data☆22Updated this week
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆22Updated 2 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 3 weeks ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 10 months ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- ☆13Updated 5 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆26Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated last month
- ☆24Updated 2 months ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆19Updated last year
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago