hemberg-lab / sc3sLinks
Single Cell Consensus Clustering with Speed
☆20Updated 2 years ago
Alternatives and similar repositories for sc3s
Users that are interested in sc3s are comparing it to the libraries listed below
Sorting:
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- ☆19Updated 4 years ago
- RNA velocity validation☆22Updated 3 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- cTPnet Package☆26Updated 3 years ago
- ACTIONet single-cell analysis framework☆43Updated last year
- ☆26Updated 5 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 2 months ago
- epigenome analysis to rank transcription factors☆14Updated 5 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 4 years ago
- Code and example of the D-SPIN framework☆24Updated 2 weeks ago
- Using BCR and expression for sequence embedding☆25Updated 2 weeks ago
- CiteFuse:☆28Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Summary statistics for repertoires☆17Updated 2 years ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 6 years ago
- ☆15Updated 2 years ago
- ☆44Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Information-based dimensionality reduction☆29Updated 11 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆23Updated last month
- benchmark for single-cell RNA-seq imputation methods☆29Updated last year
- Single cell proteomics data processing☆29Updated last month
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago