hemberg-lab / sc3sLinks
Single Cell Consensus Clustering with Speed
☆20Updated 2 years ago
Alternatives and similar repositories for sc3s
Users that are interested in sc3s are comparing it to the libraries listed below
Sorting:
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- ☆18Updated 4 years ago
- RNA velocity validation☆22Updated 3 years ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆44Updated 2 weeks ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Summary statistics for repertoires☆17Updated 2 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆34Updated last month
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- benchmark for single-cell RNA-seq imputation methods☆26Updated last year
- Code and example of the D-SPIN framework☆24Updated last week
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- ☆15Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Updated 11 months ago
- ☆26Updated 4 months ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Updated 2 years ago
- cTPnet Package☆26Updated 3 years ago
- ☆14Updated 5 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 7 months ago
- Information-based dimensionality reduction☆29Updated 9 months ago
- ☆44Updated 11 months ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- ACTIONet single-cell analysis framework☆42Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆37Updated 2 years ago
- Using BCR and expression for sequence embedding☆25Updated last week