Single Cell Consensus Clustering with Speed
☆23Dec 12, 2022Updated 3 years ago
Alternatives and similar repositories for sc3s
Users that are interested in sc3s are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cell signatures, with confidence.☆10Jun 1, 2020Updated 6 years ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 4 years ago
- Dimensionality reduction and batch integration methods for single cell data☆17Feb 9, 2023Updated 3 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆19Apr 4, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆20May 24, 2021Updated 5 years ago
- Core utilities for single-cell RNA-seq☆13Jun 16, 2026Updated 4 months ago
- ☆44Oct 20, 2023Updated 3 years ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Aug 26, 2026Updated 2 months ago
- .h5mu files interface for Seurat☆35Nov 28, 2023Updated 2 years ago
- scID☆14Oct 21, 2021Updated 5 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 7 years ago
- ☆11Sep 7, 2023Updated 3 years ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jul 27, 2026Updated 3 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Jan 15, 2023Updated 3 years ago
- software to detect doublets☆98Dec 28, 2024Updated last year
- Classification of Single cells by Transfer Learning☆12Oct 11, 2025Updated last year
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated 2 years ago
- Spatially-aware quality control for spatial transcriptomics☆17Oct 16, 2026Updated 2 weeks ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆101Nov 24, 2020Updated 5 years ago
- Benchmarking computational doublet-detection methods for single-cell RNA sequencing data☆10Feb 25, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- fast hierarchical clustering for large-scale single-cell data☆11Jul 11, 2021Updated 5 years ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 6 years ago
- A collection of project templates and useful functions for single-cell data analysis with Scanpy.☆22Jun 12, 2023Updated 3 years ago
- Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data☆23Jul 19, 2022Updated 4 years ago
- Awesome GRN enhanced AnnData toolkit☆13Feb 19, 2026Updated 8 months ago
- R package for normalisation of spatial transcriptomics data☆21Oct 26, 2026Updated last week
- Deconvolve individual immune cell types from cancer data☆10Apr 29, 2017Updated 9 years ago
- mutSignatures R package - updated (dev) version - 2.1.4☆14Jan 18, 2023Updated 3 years ago
- Calibrated clustering via knockoffs for single-cell genomics☆11Feb 13, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Python bindings for SingleR☆16Aug 14, 2026Updated 2 months ago
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- ☆17Jun 17, 2021Updated 5 years ago
- Reproducible GSEA Benchmarking☆14May 14, 2026Updated 5 months ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆59May 14, 2026Updated 5 months ago
- Cell Interaction by Multiplet Sequencing (CIM-Seq) uses computational deconvolution of RNA-seq data from partially dissociated tissue to …☆11Jan 20, 2022Updated 4 years ago
- ☆15Jun 3, 2019Updated 7 years ago