liranmao / Spatial_multi_omicsLinks
☆11Updated 6 months ago
Alternatives and similar repositories for Spatial_multi_omics
Users that are interested in Spatial_multi_omics are comparing it to the libraries listed below
Sorting:
- Statistical analysis for spatial omics data☆10Updated 3 years ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆12Updated 9 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆15Updated last year
- This repository contains codes used for the human fetal limb cell atlas.☆16Updated 6 months ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Updated 9 months ago
- ☆17Updated last year
- ☆11Updated last year
- Interactive visualisation of CellphoneDB results☆10Updated 6 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Updated 3 years ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆12Updated 10 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆28Updated 2 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 9 months ago
- ☆12Updated 4 months ago
- ☆18Updated last year
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated 2 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆18Updated 3 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated last year
- ☆16Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- Vaeda method for computational doublet annotation☆17Updated last year
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆12Updated 2 years ago
- tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.☆11Updated last year
- Trends in single cell papers☆16Updated 10 months ago
- CiteFuse:☆28Updated 2 years ago
- ☆18Updated 4 years ago
- ☆27Updated 10 months ago
- Methods for visualization and analysis of spatially-resolved gene expression☆20Updated 2 months ago