Alternatives and similar repositories for Spatial_multi_omics

Users that are interested in Spatial_multi_omics are comparing it to the libraries listed below

• stevexniu / spots
  Statistical analysis for spatial omics data
  ☆11Updated 3 years ago
• tudaga / LabelCorrection
  Python code for cross-condition label refinement in single-cell data with HiDDEN
  ☆14Updated last year
• davidliwei / PS
  Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…
  ☆17Updated last year
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 3 years ago
• limin321 / stmut
  Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data
  ☆13Updated last year
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆21Updated 3 months ago
• CSOgroup / cellcharter_analyses
  ☆11Updated last year
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year
• Teichlab / limbcellatlas
  This repository contains codes used for the human fetal limb cell atlas.
  ☆17Updated 10 months ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆30Updated 2 years ago
• lueckenlab / single-cell-papers-trends
  Trends in single cell papers
  ☆16Updated last year
• JianYang-Lab / MeDuSA
  MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…
  ☆43Updated 9 months ago
• ventolab / cellphonedbviz
  Interactive visualisation of CellphoneDB results
  ☆11Updated 10 months ago
• caleblareau / asap_reproducibility
  Reproducing all analyses and figures for the ASAP-seq paper
  ☆29Updated 4 years ago
• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆13Updated last year
• dyxmvp / Spatial_ATAC-seq
  ☆23Updated 2 years ago
• quon-titative-biology / scProjection
  Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection
  ☆16Updated 2 years ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 10 months ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆29Updated 8 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 8 months ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆35Updated 3 months ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆22Updated last year
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆42Updated last year
• wanglab-broad / CAST
  CAST package
  ☆41Updated last year
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆19Updated 4 months ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆44Updated 3 years ago
• ImXman / MACA
  MACA: Marker-based automatic cell-type annotation for single cell expression data
  ☆25Updated 2 years ago
• shmohammadi86 / SCINET
  ☆19Updated 4 years ago
• DongqingSun96 / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆17Updated 3 years ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆23Updated 2 months ago